Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00058 ATGGAATACACAAACTTTACACTTGGACCTTGCACCAATAGAGGAGAGGGGTTCTATTATGATGCATTTTACGGTGATTTAGGCTCGAACGATGACCATTTAAAAAAAATTGAGGCGGGGGCACTGAAGGCTTTTGCGGAGAAACAGCCATTTGAGCGCATTGAAGTAGCAAGGCAACAGGCACTTGAGATGTTTTCAGAAAATAATTTTAAGGTTGAGATTATCAAAGATTTGCCAGAAGACAAGACTATAACAGTATATAGATGTGGCCCTCTTGTTGATTTATGTCGTGGCCCCCACATACCAAACACATCCTTCGTGAAGGCAATTGCATGTCTGAAGGCTTCATCAGCCTATTGGAGGGGAAATAAGAAAGACCGCGAAAGCTTACAAAGAGTTTATGGTATATCTTATCCTGATCAAAAAAGTTTGAAGGAATATCTTAATATGTTGGAAGAAGCCAAGAAGTATGACCATCGGTTGTTGGGTACAAAACAAGAGCTTTTCGTTTGCCACCCACTCAGCCCAGGAAGTTGGTTCTTTCTCCCTCACGGGGATAGAGTCTACAACAAACTGATGGAGTTTATACGGGCTCAATACAGAGATAGAGGTTTTATCTCCAAATATGTACAACATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTGGTGCTCTGACTGGACTTACCCGTGTGTGCGGAGGTTTCAACAGGATGATGCTCATATATTCTGCTCAAAGTCTCAGATAA 768 41.54 MEYTNFTLGPCTNRGEGFYYDAFYGDLGSNDDHLKKIEAGALKAFAEKQPFERIEVARQQALEMFSENNFKVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKKDRESLQRVYGISYPDQKSLKEYLNMLEEAKKYDHRLLGTKQELFVCHPLSPGSWFFLPHGDRVYNKLMEFIRAQYRDRGFISKYVQHATLGNIWSCCKLQGEYVGALTGLTRVCGGFNRMMLIYSAQSLR 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 599027 601015 + Bma000225.1 Bma01g00058 74575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00058 255 SUPERFAMILY ThrRS/AlaRS common domain 7 156 IPR018163 GO:0000166
Bma01g00058 255 SUPERFAMILY Class II aaRS and biotin synthetases 134 208 IPR045864 -
Bma01g00058 255 SMART tRNA_SAD_4 84 134 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bma01g00058 255 Gene3D - 2 138 - -
Bma01g00058 255 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 84 134 IPR012947 GO:0004812|GO:0005524|GO:0043039
Bma01g00058 255 PANTHER THREONINE-TRNA LIGASE 6 207 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Bma01g00058 255 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 6 207 - -
Bma01g00058 255 Gene3D Bira Bifunctional Protein; Domain 2 140 248 IPR045864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00058 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 370.163
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00058 Bma06g00627 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00058 Bma-Chr1:599027 Bma08g00672 Bma-Chr8:41770028 3.63E-28 dispersed
Bma01g00058 Bma-Chr1:599027 Bma06g00627 Bma-Chr6:33397234 5.69E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00058 Bma_Chr01 FPKM 5.604121 5.117375 6.403581 5.793255 9.2466 8.287652 8.885498 7.783775 6.685362 6.478018