Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00063 | ATGTCCGTCTCGTGCTTTGATTGCTTCTCCGACCTACTCTGCGACGAAGACTCGTCTGAAATATTGCCAGAAGAGTCACCAGGAAGCTCGTCGGAACTGGAATCTACGGCGTCACTAGAGGAATCGATCGCCGGATTGATTGAAGACGAGAGACAATTCGTACCAGAAGGCGACTATTTGTTGGGTTTTCAATCGAAGTTGATGGACGCTTCTGCAAGGGCCGAGTCTGTTGCATGGATTCTCAAGGTTCAAGACTGTTATGGGTTTCAACCATTGACGGCGTACCTCTCCGTCAACTACTTGGATCGGTTCCTTCATTCTCGCCGATTGCCGCAAGCAAATGGGTGGCCAATACAACTCCTCTCTGTTGCTTGCTTGTCACTAGCGGCTAAGATAGAGGAAACAATGGCTCCTTCTTTACTGGATCTTCAGGTTGAAGGAGCTAAATACATATTTGAATCTAAAACAGTATTTCGAATGGAGCTTTTTGTGCTGAGCGTTTTAGATTGGCGATTACGATCCATAACACCGTTCAGCTTCATCGGTTTTTTTGCATGCAAGCTCGAACCGACCGGAACTTTTACGGGTTTTCTAGTCTCACGAGCTGGAGACATTATTCTATCGAGTATACGAGAAGACAGCTTTCTCGTCCACCGGCCGTCGTGTATAGCTGTTGCAGCTTTACTTTGTGCGGCAAATGAAATCCCAAGCTTGTCACTCGCAAATCCTGGAGAAGCTGAAATGTGGTGCAAAGGGCTAAGCAAAGAGAAAATCATTTGCTGCTACCGACTAATGCAAGAATCAATAGGCCGCAGCCACCGGAGATCGACACAGCCGAAGATTTTACCGCAGCCACGAGTGACAACGATTTGTACGAGACGGAGGTCCAGTGATTCATCATTATCGTCCTTGTCATCACCTCATAAAAGGAGAAGATTAAACAACTGCTAA | 951 | 46.69 | MSVSCFDCFSDLLCDEDSSEILPEESPGSSSELESTASLEESIAGLIEDERQFVPEGDYLLGFQSKLMDASARAESVAWILKVQDCYGFQPLTAYLSVNYLDRFLHSRRLPQANGWPIQLLSVACLSLAAKIEETMAPSLLDLQVEGAKYIFESKTVFRMELFVLSVLDWRLRSITPFSFIGFFACKLEPTGTFTGFLVSRAGDIILSSIREDSFLVHRPSCIAVAALLCAANEIPSLSLANPGEAEMWCKGLSKEKIICCYRLMQESIGRSHRRSTQPKILPQPRVTTICTRRRSSDSSLSSLSSPHKRRRLNNC | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 642030 | 644652 | - | Bma000230.1 | Bma01g00063 | 74580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00063 | 316 | SMART | Cyclin_C_2 | 175 | 293 | IPR004367 | - | |
Bma01g00063 | 316 | SUPERFAMILY | Cyclin-like | 38 | 172 | IPR036915 | - | |
Bma01g00063 | 316 | SMART | cyclin_7 | 78 | 166 | IPR013763 | - | |
Bma01g00063 | 316 | Gene3D | - | 56 | 173 | - | - | |
Bma01g00063 | 316 | PANTHER | CYCLIN-D1-1 | 3 | 312 | - | - | |
Bma01g00063 | 316 | Gene3D | - | 46 | 236 | - | - | |
Bma01g00063 | 316 | CDD | CYCLIN | 73 | 165 | IPR013763 | - | |
Bma01g00063 | 316 | MobiDBLite | consensus disorder prediction | 293 | 316 | - | - | |
Bma01g00063 | 316 | ProSitePatterns | Cyclins signature. | 73 | 104 | IPR006671 | - | |
Bma01g00063 | 316 | PANTHER | CYCLINS | 3 | 312 | IPR039361 | - | |
Bma01g00063 | 316 | Pfam | Cyclin, C-terminal domain | 175 | 279 | IPR004367 | - | |
Bma01g00063 | 316 | Pfam | Cyclin, N-terminal domain | 45 | 172 | IPR006671 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00063 | Bma15g00199 | CCT | |
Bma01g00063 | Bma06g00632 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00063 | Bma-Chr1:642030 | Bma01g02590 | Bma-Chr1:83529174 | 6.61E-64 | dispersed | |
Bma01g02248 | Bma-Chr1:79658785 | Bma01g00063 | Bma-Chr1:642030 | 1.75E-38 | transposed | |
Bma12g00136 | Bma-Chr12:1979877 | Bma01g00063 | Bma-Chr1:642030 | 6.90E-20 | transposed | |
Bma14g01747 | Bma-Chr14:37599007 | Bma01g00063 | Bma-Chr1:642030 | 8.38E-131 | transposed | |
Bma01g00063 | Bma-Chr1:642030 | Bma15g00199 | Bma-Chr15:2027740 | 3.63E-54 | wgd | |
Bma01g00063 | Bma-Chr1:642030 | Bma06g00632 | Bma-Chr6:33527117 | 1.06E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00063 | K18810 | - | zju:107419860 | 396.741 |