Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00063 ATGTCCGTCTCGTGCTTTGATTGCTTCTCCGACCTACTCTGCGACGAAGACTCGTCTGAAATATTGCCAGAAGAGTCACCAGGAAGCTCGTCGGAACTGGAATCTACGGCGTCACTAGAGGAATCGATCGCCGGATTGATTGAAGACGAGAGACAATTCGTACCAGAAGGCGACTATTTGTTGGGTTTTCAATCGAAGTTGATGGACGCTTCTGCAAGGGCCGAGTCTGTTGCATGGATTCTCAAGGTTCAAGACTGTTATGGGTTTCAACCATTGACGGCGTACCTCTCCGTCAACTACTTGGATCGGTTCCTTCATTCTCGCCGATTGCCGCAAGCAAATGGGTGGCCAATACAACTCCTCTCTGTTGCTTGCTTGTCACTAGCGGCTAAGATAGAGGAAACAATGGCTCCTTCTTTACTGGATCTTCAGGTTGAAGGAGCTAAATACATATTTGAATCTAAAACAGTATTTCGAATGGAGCTTTTTGTGCTGAGCGTTTTAGATTGGCGATTACGATCCATAACACCGTTCAGCTTCATCGGTTTTTTTGCATGCAAGCTCGAACCGACCGGAACTTTTACGGGTTTTCTAGTCTCACGAGCTGGAGACATTATTCTATCGAGTATACGAGAAGACAGCTTTCTCGTCCACCGGCCGTCGTGTATAGCTGTTGCAGCTTTACTTTGTGCGGCAAATGAAATCCCAAGCTTGTCACTCGCAAATCCTGGAGAAGCTGAAATGTGGTGCAAAGGGCTAAGCAAAGAGAAAATCATTTGCTGCTACCGACTAATGCAAGAATCAATAGGCCGCAGCCACCGGAGATCGACACAGCCGAAGATTTTACCGCAGCCACGAGTGACAACGATTTGTACGAGACGGAGGTCCAGTGATTCATCATTATCGTCCTTGTCATCACCTCATAAAAGGAGAAGATTAAACAACTGCTAA 951 46.69 MSVSCFDCFSDLLCDEDSSEILPEESPGSSSELESTASLEESIAGLIEDERQFVPEGDYLLGFQSKLMDASARAESVAWILKVQDCYGFQPLTAYLSVNYLDRFLHSRRLPQANGWPIQLLSVACLSLAAKIEETMAPSLLDLQVEGAKYIFESKTVFRMELFVLSVLDWRLRSITPFSFIGFFACKLEPTGTFTGFLVSRAGDIILSSIREDSFLVHRPSCIAVAALLCAANEIPSLSLANPGEAEMWCKGLSKEKIICCYRLMQESIGRSHRRSTQPKILPQPRVTTICTRRRSSDSSLSSLSSPHKRRRLNNC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 642030 644652 - Bma000230.1 Bma01g00063 74580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00063 316 SMART Cyclin_C_2 175 293 IPR004367 -
Bma01g00063 316 SUPERFAMILY Cyclin-like 38 172 IPR036915 -
Bma01g00063 316 SMART cyclin_7 78 166 IPR013763 -
Bma01g00063 316 Gene3D - 56 173 - -
Bma01g00063 316 PANTHER CYCLIN-D1-1 3 312 - -
Bma01g00063 316 Gene3D - 46 236 - -
Bma01g00063 316 CDD CYCLIN 73 165 IPR013763 -
Bma01g00063 316 MobiDBLite consensus disorder prediction 293 316 - -
Bma01g00063 316 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Bma01g00063 316 PANTHER CYCLINS 3 312 IPR039361 -
Bma01g00063 316 Pfam Cyclin, C-terminal domain 175 279 IPR004367 -
Bma01g00063 316 Pfam Cyclin, N-terminal domain 45 172 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00063 Bma15g00199 CCT
Bma01g00063 Bma06g00632 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00063 Bma-Chr1:642030 Bma01g02590 Bma-Chr1:83529174 6.61E-64 dispersed
Bma01g02248 Bma-Chr1:79658785 Bma01g00063 Bma-Chr1:642030 1.75E-38 transposed
Bma12g00136 Bma-Chr12:1979877 Bma01g00063 Bma-Chr1:642030 6.90E-20 transposed
Bma14g01747 Bma-Chr14:37599007 Bma01g00063 Bma-Chr1:642030 8.38E-131 transposed
Bma01g00063 Bma-Chr1:642030 Bma15g00199 Bma-Chr15:2027740 3.63E-54 wgd
Bma01g00063 Bma-Chr1:642030 Bma06g00632 Bma-Chr6:33527117 1.06E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00063 K18810 - zju:107419860 396.741