Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00067 ATGCCTGGAAACCGATCTAAGTCGGAGAAGCAAGATGATGGGAATCATTGTAGGCGGGATCCCTATGAAGTCCTCGGGGTTTTGAGGAACTCCACAGATCAGGAAATCAGAAGCGCTTACCGAAGAATGGCGCTCAAGTACCATCCTGACAAGAACGCAAATGATCCTAAAGCAGCTGATTTGTTTAAGGAGGCTACCTTTTCCTACAAAATTTTGTCTGATCCAGATAAACGTAGGCAGTTTGACGCAGCTGGCTTTGAGGCTGTGGAAACTGATAATCAAGAATTGGAGTTAGATCTGTCCAGTTTGGGAGCTGTTAACACAATGTTTGCCGCCATTTTCTGTAAACTTGGTGTTCCAATTAAGACTACCGTGTCAGCAAATGTATTGGAAGAGGCACTTAATGGCATGGTGACCATCTGTCCACTATCGTTGGGACAGCCTATATCTAAAAAGGTTGAAAAGCAATGCGCTCACTTTTATTCTGTTACAATAACAGAATCCGATGCACGAGGCGGACTTGTATGCCGAGTAGAATCACCTGATAAAAGCAAATTTAAGTTGGCTGTTATTGTGTGTGTTGATTTTTTGTTTCTTTTGCAGGATGAAAGCATCAAAACAGGAAAAGTAACATCTGCTGGAATATTTTTTCTAGGTTTTCCTGTCTATCGATTTAACCAAACAATTAGTTCTGTAGCTGCTGCAAAAGATCCTGATTCTGCCTTTTTTAAACGGTTGGATGGGTTGCAGCCTTGTGAAATTACTGAAATTAAGGCAGGAACTCATTTCTTTGCCGTCTATGGTGACAACTTTTTCAAAAGTGTGAGCTACACAATAGAGGCCGTTTGTGCCACAGCATTTTCCAAACAAAAGGATGATCTCAGGGCTGTGGAAGCTGAACTTTTGACGAAAAGGGTTGAAATATCGAAATTTGAATCTGAATATAGAGAGGTACTGGCACAATTTACGGAAATGACCAGTAGGTATGCTCAAGAGAAGCAAGAGGTAAGTTTATCTCATGGATATGTTCACTGCTCGGTTTTTACTAAGGGTTATTTATAA 1062 40.96 MPGNRSKSEKQDDGNHCRRDPYEVLGVLRNSTDQEIRSAYRRMALKYHPDKNANDPKAADLFKEATFSYKILSDPDKRRQFDAAGFEAVETDNQELELDLSSLGAVNTMFAAIFCKLGVPIKTTVSANVLEEALNGMVTICPLSLGQPISKKVEKQCAHFYSVTITESDARGGLVCRVESPDKSKFKLAVIVCVDFLFLLQDESIKTGKVTSAGIFFLGFPVYRFNQTISSVAAAKDPDSAFFKRLDGLQPCEITEIKAGTHFFAVYGDNFFKSVSYTIEAVCATAFSKQKDDLRAVEAELLTKRVEISKFESEYREVLAQFTEMTSRYAQEKQEVSLSHGYVHCSVFTKGYL 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 685103 688532 - Bma000234.1 Bma01g00067 74584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00067 353 MobiDBLite consensus disorder prediction 1 24 - -
Bma01g00067 353 Gene3D DnaJ domain 4 103 IPR036869 -
Bma01g00067 353 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Bma01g00067 353 CDD DnaJ 20 74 IPR001623 -
Bma01g00067 353 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 1 336 - -
Bma01g00067 353 PANTHER DNAJ DOMAIN-CONTAINING PROTEIN-RELATED 1 336 - -
Bma01g00067 353 SUPERFAMILY Chaperone J-domain 18 91 IPR036869 -
Bma01g00067 353 SMART dnaj_3 19 77 IPR001623 -
Bma01g00067 353 Pfam DnaJ domain 20 82 IPR001623 -
Bma01g00067 353 MobiDBLite consensus disorder prediction 1 23 - -
Bma01g00067 353 PRINTS DnaJ domain signature 40 55 IPR001623 -
Bma01g00067 353 PRINTS DnaJ domain signature 77 96 IPR001623 -
Bma01g00067 353 PRINTS DnaJ domain signature 57 77 IPR001623 -
Bma01g00067 353 PRINTS DnaJ domain signature 22 40 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00067 - - - vvi:100256999 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00067 Bma-Chr1:685103 Bma14g01905 Bma-Chr14:40730751 2.30E-142 dispersed
Bma01g00067 Bma-Chr1:685103 Bma10g00977 Bma-Chr10:22073342 3.43E-14 transposed
Bma01g00067 Bma-Chr1:685103 Bma10g00969 Bma-Chr10:21542443 3.24E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007840 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00067 Bma_Chr01 FPKM 0.523957 0.0 1.761362 1.988078 4.551476 3.730775 3.900115 3.819253 3.370486 4.641953