Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00069 ATGGGATTCAGATTATGTTTCAATCTTTCCATTCTACTGTATCTTTCAGTGTTGTCAGCTCCGATTTCTGCTGAGTTTTTCTCTGATGCGTCGTTGATTCCGCCATTGATAAACTCTACCTCTAGCTCATGGAAAGAGTTCAAAAAACTTGCAGGTTGTCATGCTGGGGAGAAACTCGATGGCTTATCCAAGATCAAGCGATATTTCCAGTATTTCGGATATCTTCCTGAATCGGGTTTCAATTTCACCGATGAATTTGATAAGAGTTTTGAATCAGCGGTCAGAACTTACCAGAAGAACTTCAATCTCAACGTCACCGGCGAACTAGATGAACTGACGCTAAAGCAAGTTCAAAGGCCGAGATGCGGTGTCGCCGATATAATCAACGGTTCAACGTCAATGAATTCAGGGAAGCCGTCCCACTTCAAAGGATCACACTTTCATACCGTTTCTCACTATTCTTTCTTCCACGGAACTCCTAGATGGCCGGATAGTAAGCAAGATTTAACTTACGCTTTTTTGCCGGATAACCAACTTTCCAACGACGTGAAGAGCGTATTCGTGCGTGCTTTCTCTCGGTGGTCCGCCGTAACTCCCTTGACGTTTACAGCAATAGAAACATTCAACTCGGCCGACATTAGAATCGGATTCTTCACTGGCGACCATGGAGACGGAGAACCGTTCGACGGAGTTCTAGGGACTCTTGCCCACGCATTCTCGCCGCCTAGTGGACGGTTCCACTTAGACGGCGACGAAAACTGGGTGATCTCCGGGGACATAAGGACAGCTTCATTGAGCTCGTCGGCGATCGATCTCGAGTCCGTGGCGGTGCACGAGATCGGGCACTTGCTCGGACTGGGCCACTCGTCGGTAGAGGAAGCGATTATGTACCCGACGATCTCGTCGAGAACGCGAAAGATTGAGCTCAACGCCGACGACATAAACGGAATTCAAGAATTATACGGGTCGAATCCAAATGGAACCAGTTCCTCAACGCCGGGAACGTCCACGCAAGAGAGAGACACCAGCGGTGGCGCCCACAGTTTGACTCCGTGGTGGGGCCTCTGCCTCATCTTGGCCGTAGAACTTTTGCTACTAAGCCATATGATCTTGTAA 1116 48.75 MGFRLCFNLSILLYLSVLSAPISAEFFSDASLIPPLINSTSSSWKEFKKLAGCHAGEKLDGLSKIKRYFQYFGYLPESGFNFTDEFDKSFESAVRTYQKNFNLNVTGELDELTLKQVQRPRCGVADIINGSTSMNSGKPSHFKGSHFHTVSHYSFFHGTPRWPDSKQDLTYAFLPDNQLSNDVKSVFVRAFSRWSAVTPLTFTAIETFNSADIRIGFFTGDHGDGEPFDGVLGTLAHAFSPPSGRFHLDGDENWVISGDIRTASLSSSAIDLESVAVHEIGHLLGLGHSSVEEAIMYPTISSRTRKIELNADDINGIQELYGSNPNGTSSSTPGTSTQERDTSGGAHSLTPWWGLCLILAVELLLLSHMIL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 695218 696333 - Bma000236.1 Bma01g00069 74586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00069 371 Pfam Matrixin 162 322 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bma01g00069 371 SUPERFAMILY PGBD-like 53 127 IPR036365 -
Bma01g00069 371 Pfam Putative peptidoglycan binding domain 63 116 IPR002477 -
Bma01g00069 371 Gene3D Collagenase (Catalytic Domain) 50 328 IPR024079 GO:0008237
Bma01g00069 371 PANTHER MATRIX METALLOPROTEINASE 14 364 - -
Bma01g00069 371 MobiDBLite consensus disorder prediction 318 343 - -
Bma01g00069 371 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 155 325 - -
Bma01g00069 371 CDD ZnMc_MMP 161 322 IPR033739 GO:0008237|GO:0008270
Bma01g00069 371 PRINTS Matrixin signature 275 300 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bma01g00069 371 PRINTS Matrixin signature 187 202 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bma01g00069 371 PRINTS Matrixin signature 211 239 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bma01g00069 371 PRINTS Matrixin signature 309 322 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bma01g00069 371 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bma01g00069 371 SMART col_5 158 323 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bma01g00069 371 PANTHER MATRIX METALLOPROTEINASE 14 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00069 - - - rcu:8270377 466.077
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00069 Bma06g00637 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00069 Bma-Chr1:695218 Bma03g01327 Bma-Chr3:26897446 1.02E-87 dispersed
Bma03g00371 Bma-Chr3:2829131 Bma01g00069 Bma-Chr1:695218 3.92E-73 transposed
Bma06g01378 Bma-Chr6:50580023 Bma01g00069 Bma-Chr1:695218 7.02E-87 transposed
Bma07g01596 Bma-Chr7:51227131 Bma01g00069 Bma-Chr1:695218 6.37E-97 transposed
Bma10g00171 Bma-Chr10:1499415 Bma01g00069 Bma-Chr1:695218 0 transposed
Bma01g00069 Bma-Chr1:695218 Bma06g00637 Bma-Chr6:33968833 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006919 2 1 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00069 Bma_Chr01 FPKM 22.206179 24.344025 9.258568 10.041302 5.775353 7.637078 8.365893 0.931411 0.727748 0.752128