Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00070 ATGGGTGAATCTGCTGATTATGTTCTGAAAAACGAACCTGAGATAGGGGAGACGCTTTCCTCCAATCCGATAATGGAAGTCTCAGTTTCGTTTGGTAGGTTCGAGAATGACGAACTTTCTTGGGAAAAATGGTCGACTTTTTCGCCTAACAAATACTTGGAAGAAGTAGAGAAGTGCGCTACGCCTGGATCAGTAGCTCAGAAGAAGGCATACTTCGAAGCTCATTATAAGAAGATAGCTGCTAGGAAAGCTGAGCTTCTGGAGCAGGAAAATCAAGTAGCAAACAACCAGTTGAAGCCATTTGATGAGAACGATGAAGATCTGAAATACTCCAGTGTCGAGAACGATCAAGAACTCGTTGAATCTAGAAATCAGAACTCTTCCGATGAGATTGAGCAAGGAATCGCTTCGAATGATGAGGTGAATGAGTTGAACAGTGACGAGGTGGAAGTGGAAGTTGATTGTAGATTAGAAAGTGAAATCCCATCGATTGAAGAAAAGAAAGAGGTGGATGTAAAATCTGAGTGTTCGAACACTAATAAATCAGAAGAACCTGTTGTCGAAAATGAAATCAAACCTCCTTCTCCAACCATTGAAGACCCTCACAGCTGTTTGGACTGCGAGAAAACAAGAACGGCGCCAGAATCGAAAGAAAAAGCCACCAAATCAGAGAGTGGGAAGGAATCTGGAAAGATTACTCCTGCGAGCAAGGATAAACACAGTGGGATTGTAAAGAAGAAACCAGTTAAATCTGCATCTAAAGATTCACTCATTACCCCAAGAATTTCCAAGGATAATTCAACTTATATCACGCCTAAAACAAGATCTTCGACGAAGAACAGCATCGGATCATCATTATTAAGGAGCAAAATTCCTCAAGATGGGCCGGGGAGAAAAGTCGCTCTTAAATCTTTACACATGTCTCTCAGCTTGGGATCCCCAAATTCTCATCCAGCTTCTCTCAACACAGCTAGGAAATCTCTCATCATGGAGAAAATGGGTGATAAGGAGATCGTCAAAAGAGCATTCAAGGCATTCCAGAGCAGTTTCAATCAATAA 1059 41.74 MGESADYVLKNEPEIGETLSSNPIMEVSVSFGRFENDELSWEKWSTFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLEQENQVANNQLKPFDENDEDLKYSSVENDQELVESRNQNSSDEIEQGIASNDEVNELNSDEVEVEVDCRLESEIPSIEEKKEVDVKSECSNTNKSEEPVVENEIKPPSPTIEDPHSCLDCEKTRTAPESKEKATKSESGKESGKITPASKDKHSGIVKKKPVKSASKDSLITPRISKDNSTYITPKTRSSTKNSIGSSLLRSKIPQDGPGRKVALKSLHMSLSLGSPNSHPASLNTARKSLIMEKMGDKEIVKRAFKAFQSSFNQ 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 698764 700044 - Bma000237.1 Bma01g00070 74587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00070 352 Coils Coil 77 97 - -
Bma01g00070 352 MobiDBLite consensus disorder prediction 202 242 - -
Bma01g00070 352 MobiDBLite consensus disorder prediction 94 298 - -
Bma01g00070 352 MobiDBLite consensus disorder prediction 117 142 - -
Bma01g00070 352 MobiDBLite consensus disorder prediction 149 178 - -
Bma01g00070 352 MobiDBLite consensus disorder prediction 100 116 - -
Bma01g00070 352 MobiDBLite consensus disorder prediction 256 288 - -
Bma01g00070 352 PANTHER F3I6.9 PROTEIN 1 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00070 - - - csv:101209261 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma15g00249 Bma-Chr15:2489923 Bma01g00070 Bma-Chr1:698764 5.54E-22 transposed
Bma01g00070 Bma-Chr1:698764 Bma15g00203 Bma-Chr15:2078416 1.76E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g796 Blo01g00408 Blo16g01145 Bda01g02240 Bda11g01248 Bpe13g00476 . . . Cmo04g01677 . . . . . Sed06g1595 . Cpe01g01417 Bhi07g01660 Tan04g1166 Cmetu10g1704 . . . . Cla05g02506 Cam05g2690 Cec05g2723 Cco05g2758 Clacu05g2693 Cmu05g2547 Cre05g2662 . . . Cone12ag0619 Lsi04g00505 Csa05g02378 Chy10g00943 Cme10g00484 Blo06g00860 . . Bda11g01248 . . Bma01g00070 . . . . Cma04g01602 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003701 3 7 3 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00070 Bma_Chr01 FPKM 2.161867 2.609151 12.398078 11.427938 14.347505 14.043429 15.295456 0.0918 0.0 0.079267