Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00071 ATGGTGAACGCTTCGCCTTCGGTTGTTGCAGAATCACGTATACCTCAAAAGCAAGACTCGTTGATTTTTCTTTGTGATTGTGGTGTAAACTGGAGCCATTTGGAACCTCAATTGATGGAAGGAGGAAACACACAGAGGCTAACAAGAAATGATGCTCTAACATATCTTAATGCTTTGAAGGAAACCTTTCACGACAACACACAAACATATGACGACTTCCTTAATGTTATGAAAGATTTTAAAGCTCGTAGAATTGATGTAGCAGTTGTCAGAAAGAGAGTAAAGAACTTATTCAAAGATCATCCAAAACTAATGTTTGGCTTCAACACCTTCTTGCCCAGAAGATATGAGATCCATCCCCCCCTACTCAATCAAGATCCCACGAAAACGACGCAGCCTTTTGGATTTGATGAAGCTATGAAATATGTAATGAAGATTAAGGTCTGA 447 39.15 MVNASPSVVAESRIPQKQDSLIFLCDCGVNWSHLEPQLMEGGNTQRLTRNDALTYLNALKETFHDNTQTYDDFLNVMKDFKARRIDVAVVRKRVKNLFKDHPKLMFGFNTFLPRRYEIHPPLLNQDPTKTTQPFGFDEAMKYVMKIKV 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 702194 703288 - Bma000238.1 Bma01g00071 74588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00071 148 SUPERFAMILY PAH2 domain 43 113 IPR036600 GO:0006355
Bma01g00071 148 ProSiteProfiles PAH domain profile. 45 115 IPR003822 GO:0006355
Bma01g00071 148 PANTHER SIN3A, ISOFORM G 40 147 - -
Bma01g00071 148 Pfam Paired amphipathic helix repeat 69 112 IPR003822 GO:0006355
Bma01g00071 148 Gene3D Paired amphipathic helix 51 113 IPR036600 GO:0006355
Bma01g00071 148 PANTHER SIN3B-RELATED 40 147 IPR039774 GO:0003714
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00071 K11644 SIN3A; paired amphipathic helix protein Sin3a - jre:109008676 129.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00071 Bma15g00207 CCT
Bma01g00071 Bma15g00207 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00071 Bma-Chr1:702194 Bma14g01755 Bma-Chr14:37771357 3.39E-06 dispersed
Bma01g00071 Bma-Chr1:702194 Bma15g00207 Bma-Chr15:2092161 3.23E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013218 1 0 0 1 0 2 1 2 2 0 1 2 1 1 1 1 2 0 1 2 0 1 1 0 0 0 1 1 0 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56597 PF02671 PAH 9.80E-15 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00071 Bma_Chr01 FPKM 5.833333 6.960683 7.762516 7.348918 4.986359 3.800127 7.947901 9.158212 6.791814 10.837925