Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00072 ATGTCTGTTTCTAGACGGTTGTCGGTCAGTCCTCCACATTCCGATGTGGCGTCGACTCATGAATTTAAGCAGAGAGTCATAGCTTGCCTCAATAAACTCAGCGATCGCGATACTCTTGCTGTCGCTACCAGTGAGCTAGAGGCTATTGCTAAAACCTTGAAGTATGATTTCTTCTCGCCTTTTCTTTCTTGTATTCATAACACTGATGCTACTTTGAAGTCGCCGGTGCGGAAACAATGTGTGAACCTATTGAGTGTTCTTTCTTACGCTCATGGCGATGCGTTATCTCCTTTCTTATGTAAGATGATTTCGACCGTTGTTCGTCGCCTCCGTGATCCTGACTCTGCCGTGAGATCTGCCTGCGTCGACGCTTCGGCGGCTATGTCCTCGCAAATCACGAAGCCTTCATTTTCGTATTTTTTGAAACCGTTTATGGAAACGCTTACGCTTGAGCAGGACCTCAACTCTCAGATCGGTTCCGCGCTGTGCCTCTCTGCGGCGGTGGAGGCTGCACCGGATCCGGAGGTTATGCAGCTGAGGAAGTGCTTGCCGAGGCTTGGAAAATTGGCGAGGAGCGAGGGGTTCAAAGCTAAAGCGGCGCTATTAGTTCTTATCGGAAGTATTGTTGGAGTTGGTGGCGCGTCCAGCCAGACCGTCTTGGACTGGTTGATACCTTGCCTGGTGGAGTCTTTGGGCAGTGATGATTGGGCTGTAAGGAAAGCGGCGGCTGAGACACTTGGGAGGGTGGCTTTGGCGGAGAGAGACTTGGCGGCTGATTATAAATCATCGTGCATTAGTTCTATGGAGAGTCGGAGATTTGATAAGATAAAGGTTGTCCGGGAGACTATGAATCAGACCTTGGATTCGTGGCGAGAGATTTCTAATGTTCATGAGGAAGTCTATGCAGCATCTCCACAGAAATCTCCCACAATAGATGGTGGTTGTAAAGGCGGTGGATGCTTTCCTCATGTCTCCAAAACTTGTCATGAGATCAGTTCGAAAACTCCAGCGAAGAAAAATGTGCCCACAAATAAGCTCCCGCCATTAGCTACTCCCCTTTTGACTACTGCAAAAAAAGATAGTGCTTTGAAGAGCAGTGAGTTCAACTCAAGTAAATACATTACTTCTAAGCTGGACCAAAAGAAATTTTCTGAATCGAAATTTGAAAATGGAGAATCAAACTCGCCTTCTTCAAATGTGACTTTCGCAAAGGATATGACAATGAGTGGCTGTGGAGATTTGGATTTTAGAGATGGTAGGGATGGTGGAAATTCCAAAGAAAAATCTCTTCTTTTTAATCATCCCCGTGATGAAAAAGCTAATAAATTTAGGAGTTGTTCTCGTGTAGTTCCATATATAGACAGTGAGGACCAAAACCCAGATGCTTTTGTTAGCAGTAGTGCTGATGAGGCTTTTGAGAACCAGAAAGATGTTGAGGATCTCTCTTTGATTCGTGATCAACTTCTACACATCGAAAACCAGCAATCCAATCTTCTAGACCTCCTGCAGAGATTTATTGGGAGCTCACAAAATGGGATGAATTCTCTAGAGACGCGAGTGCATGGACTAGAGATGGCATTGGATGAAATATCTTACGACTTGGCTGTATCAAATGGAAAGATACCAAACAGCAGTGTCTCTGGAAACAAATGTTGCAAGCTGCCAGGCGCAGAATTTCTTAGTTCCAAATTCTGGAAGAGAACGGAAGGGAGGTATTGTGGCTCAAGGTTTCATTCTACTGGCAACGAACAACCACCAAATTGTCTTCATCCCATGGCTGATAAAGACGCTAAAATGGAACCAAATATGCCAGAAAGCCGAAAGTTTCATTGTCGTAGTGGGAACAAGTTTGTCGTAAATCAATTGGCAGATGTCCACGGCAACTCCAATGAAAATTTAGAGCGCTATTCAATGGGAATGCAGAAGACAACAGTCAAAGAAAATGAGGTTGTTAAAGGTGGCAGCGGGGTGGCCGTCACAGGGCATTAA 1989 45.25 MSVSRRLSVSPPHSDVASTHEFKQRVIACLNKLSDRDTLAVATSELEAIAKTLKYDFFSPFLSCIHNTDATLKSPVRKQCVNLLSVLSYAHGDALSPFLCKMISTVVRRLRDPDSAVRSACVDASAAMSSQITKPSFSYFLKPFMETLTLEQDLNSQIGSALCLSAAVEAAPDPEVMQLRKCLPRLGKLARSEGFKAKAALLVLIGSIVGVGGASSQTVLDWLIPCLVESLGSDDWAVRKAAAETLGRVALAERDLAADYKSSCISSMESRRFDKIKVVRETMNQTLDSWREISNVHEEVYAASPQKSPTIDGGCKGGGCFPHVSKTCHEISSKTPAKKNVPTNKLPPLATPLLTTAKKDSALKSSEFNSSKYITSKLDQKKFSESKFENGESNSPSSNVTFAKDMTMSGCGDLDFRDGRDGGNSKEKSLLFNHPRDEKANKFRSCSRVVPYIDSEDQNPDAFVSSSADEAFENQKDVEDLSLIRDQLLHIENQQSNLLDLLQRFIGSSQNGMNSLETRVHGLEMALDEISYDLAVSNGKIPNSSVSGNKCCKLPGAEFLSSKFWKRTEGRYCGSRFHSTGNEQPPNCLHPMADKDAKMEPNMPESRKFHCRSGNKFVVNQLADVHGNSNENLERYSMGMQKTTVKENEVVKGGSGVAVTGH 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 721546 724343 + Bma000239.1 Bma01g00072 74589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00072 662 ProSiteProfiles HEAT repeat profile. 223 261 IPR021133 -
Bma01g00072 662 Gene3D - 19 371 IPR011989 -
Bma01g00072 662 MobiDBLite consensus disorder prediction 385 404 - -
Bma01g00072 662 MobiDBLite consensus disorder prediction 389 404 - -
Bma01g00072 662 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 7 649 IPR033337 GO:0005874|GO:0008017
Bma01g00072 662 SUPERFAMILY ARM repeat 20 296 IPR016024 -
Bma01g00072 662 Pfam HEAT-like repeat 199 248 - -
Bma01g00072 662 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 7 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00072 - - - qsu:111996814 709.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00072 Bma-Chr1:721546 Bma06g01035 Bma-Chr6:47162336 2.91E-54 dispersed
Bma01g00072 Bma-Chr1:721546 Bma08g00189 Bma-Chr8:2280445 1.65E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g803 Blo01g00409 Blo16g01141 Bda01g02242 . Bpe13g00475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00072 . . . . . . . . . Cpe07g00613 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005532 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00072 Bma_Chr01 FPKM 11.17837 12.63259 12.312641 11.962193 12.598556 11.91245 14.286223 13.227328 13.347188 13.585084