Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00077 ATGAAGCGACGGACTACGGAGGAGGACTCCCCCACGGGTCTCCCAGTCAGCAATGGTGCAGCAGTGAACGATAATAAGAAACGCCATAAAACAGGAGCAAGCAGGGAGATGAATAGCGAATTAAAAACTGGAGGAGAGTTGCAGAATTCCCAGACCCCTAAGCAGGACTACATTCACGTTCGAGCAAGAAGGGGCCAAGCTACAGACAGCCATAGCTTAGCTGAAAGGGCTAGAAGAGAGAAGATAAGTGAGAGAATGAAAATTCTGCAGGATTTGGTTCCAGGCTGCAACAAGGTTATCGGAAAAGCTTTGGTGCTTGACGAGATCATCAACTACATTCAATCCTTACAGCGCCAAGTTGAGTTCTTGTCTATGAAGATTGAAGCAGTTGATTCAAGAATGAGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATATTCATTTGGCCTTTCAGTATGGTGAGCAGACATTTGAAACCAATAGCGTAGCATTTGGCTCACACGCCACAAGAGAGTTCAGGCTCGGTTCGTCGCCTGAGTGGCTGCATATGCAGGTTGGCGGAGCTTTTGAAAGAACAACATAG 582 46.91 MKRRTTEEDSPTGLPVSNGAAVNDNKKRHKTGASREMNSELKTGGELQNSQTPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKIEAVDSRMSPGIEVFPPKDIHLAFQYGEQTFETNSVAFGSHATREFRLGSSPEWLHMQVGGAFERTT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 746806 748063 - Bma000243.1 Bma01g00077 74594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00077 193 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 116 IPR011598 GO:0046983
Bma01g00077 193 CDD bHLH_AtBPE_like 56 141 - -
Bma01g00077 193 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 134 IPR036638 GO:0046983
Bma01g00077 193 MobiDBLite consensus disorder prediction 1 54 - -
Bma01g00077 193 SMART finulus 72 122 IPR011598 GO:0046983
Bma01g00077 193 Gene3D - 63 136 IPR036638 GO:0046983
Bma01g00077 193 PANTHER BNAC05G07950D PROTEIN 2 193 - -
Bma01g00077 193 Coils Coil 113 133 - -
Bma01g00077 193 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 193 IPR024097 GO:0006355
Bma01g00077 193 MobiDBLite consensus disorder prediction 37 54 - -
Bma01g00077 193 Pfam Helix-loop-helix DNA-binding domain 70 117 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00077 Bma14g01759 CCT
Bma01g00077 Bma14g01759 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00077 Bma-Chr1:746806 Bma14g01759 Bma-Chr14:37842115 3.92E-58 dispersed
Bma01g00077 Bma-Chr1:746806 Bma12g01018 Bma-Chr12:42230454 5.74E-59 wgd
Bma01g00077 Bma-Chr1:746806 Bma14g01772 Bma-Chr14:38098924 3.59E-58 wgd
Bma01g00077 Bma-Chr1:746806 Bma08g00196 Bma-Chr8:2338932 6.18E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56598 PF00010 HLH 1.20E-08 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00077 - - mnt:21394273 270.396