Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00083 | AAGAAAAGATTTTTTATGATTTCGGTTTTGTTGCTGTTGGGAGTGGTGGCCCACGCCAATATCGGAGAGTTTGATGATTACTGGAAACATCGAGAAGAGGAAGCCAAGGCGGCGGCGCTTGACGCTTATGATCCTAACCCTGAAGCCGTCGCTGATAGCTTAAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACAGCACAAGAAGGAACCTGAAGAAGACGAAGGGTCCATGCAGGGGGACGAACCCCATCGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAATGACAGGAAGAAGTTAGCCACCTGTGCCCTGGGCTTCGGTCACCAGACCACCGGAGGAAAAGGCGGCCGATTCTACGTCGTTACTGACGCCTCCGACTCTGACCTGATTAACCCTAAACCGGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACCCAAGAGCTGATGGTGAACAGCCACAAAACCATCGACGCAAGAGGATCCGACGTACATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTTCCGGCACCGGCGGACTGATCAGAGATTCGGTCGACCACTATGGGTTTAGAACGAGAAGCGACGGGGATGGAATCTCGATCTACGGATCTTCAAATATTTGGATCGACCACGTTTCTATGTCCAACTGCCAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACAATCTCGAACTGTCACTTCACCCACCATAACGAGGTGATGTTGTTCGGAGCAAGCGATAGCTATTCCGGCGATGCAATAATGCAAATTACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCGTCCACGTCGTTAACAACGACTACACGCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTATGCGCCGCCGGAGGTGTGGAAAAGTTGGACGTGGAGATCGGAGGGAGATCTAATGCTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAAGCAAGAGAAGGCCATATCATAAGCTGGACATGATCTCCTACAAGCCCGGAACGTTCGTTTCCCGACTAACTCGCTTCTCCGGCGCACTCAAATGTCACTTCGGCAAGCCCTGT | 1296 | 51.77 | KKRFFMISVLLLLGVVAHANIGEFDDYWKHREEEAKAAALDAYDPNPEAVADSLNAQVGKAIAGTNSTRRNLKKTKGPCRGTNPIDRCWRCDPNWANDRKKLATCALGFGHQTTGGKGGRFYVVTDASDSDLINPKPGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVNSHKTIDARGSDVHIAFGAGITVQFVKNVIIHGLHIHDIVSGTGGLIRDSVDHYGFRTRSDGDGISIYGSSNIWIDHVSMSNCQDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDAIMQITVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLMLNGAFFVRSGDQSKRRPYHKLDMISYKPGTFVSRLTRFSGALKCHFGKPC | 432 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 818412 | 820208 | + | Bma030169 | Bma01g00083 | 74600 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 105 | 122 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 229 | 250 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 331 | 350 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 129 | 154 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 309 | 328 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 403 | 426 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 165 | 181 | IPR018082 | - | |
Bma01g00083 | 432 | PRINTS | Pollen allergen Amb family signature | 373 | 397 | IPR018082 | - | |
Bma01g00083 | 432 | PANTHER | PECTATE LYASE | 4 | 432 | - | - | |
Bma01g00083 | 432 | SMART | amb_all | 157 | 354 | IPR002022 | - | |
Bma01g00083 | 432 | Gene3D | - | 82 | 425 | IPR012334 | - | |
Bma01g00083 | 432 | SUPERFAMILY | Pectin lyase-like | 83 | 423 | IPR011050 | - | |
Bma01g00083 | 432 | Pfam | Pectate lyase, N terminus | 20 | 72 | IPR007524 | GO:0030570 | |
Bma01g00083 | 432 | Pfam | Pectate lyase | 166 | 348 | IPR002022 | - | |
Bma01g00083 | 432 | PANTHER | PECTATE LYASE 18-RELATED | 4 | 432 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00083 | Bma-Chr1:818412 | Bma02g00407 | Bma-Chr2:6245887 | 0 | dispersed | |
Bma01g00083 | Bma-Chr1:818412 | Bma06g00671 | Bma-Chr6:35999301 | 0 | wgd | |
Bma01g00083 | Bma-Chr1:818412 | Bma06g00660 | Bma-Chr6:35657954 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00083 | K01728 | - | csv:101206497 | 685.256 |