Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00083 AAGAAAAGATTTTTTATGATTTCGGTTTTGTTGCTGTTGGGAGTGGTGGCCCACGCCAATATCGGAGAGTTTGATGATTACTGGAAACATCGAGAAGAGGAAGCCAAGGCGGCGGCGCTTGACGCTTATGATCCTAACCCTGAAGCCGTCGCTGATAGCTTAAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACAGCACAAGAAGGAACCTGAAGAAGACGAAGGGTCCATGCAGGGGGACGAACCCCATCGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCAATGACAGGAAGAAGTTAGCCACCTGTGCCCTGGGCTTCGGTCACCAGACCACCGGAGGAAAAGGCGGCCGATTCTACGTCGTTACTGACGCCTCCGACTCTGACCTGATTAACCCTAAACCGGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACCCAAGAGCTGATGGTGAACAGCCACAAAACCATCGACGCAAGAGGATCCGACGTACATATCGCGTTCGGAGCCGGAATTACGGTCCAGTTTGTGAAGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTTCCGGCACCGGCGGACTGATCAGAGATTCGGTCGACCACTATGGGTTTAGAACGAGAAGCGACGGGGATGGAATCTCGATCTACGGATCTTCAAATATTTGGATCGACCACGTTTCTATGTCCAACTGCCAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACAATCTCGAACTGTCACTTCACCCACCATAACGAGGTGATGTTGTTCGGAGCAAGCGATAGCTATTCCGGCGATGCAATAATGCAAATTACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCGAGGTGCAGATGGGGCTTCGTCCACGTCGTTAACAACGACTACACGCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTATGCGCCGCCGGAGGTGTGGAAAAGTTGGACGTGGAGATCGGAGGGAGATCTAATGCTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAAGCAAGAGAAGGCCATATCATAAGCTGGACATGATCTCCTACAAGCCCGGAACGTTCGTTTCCCGACTAACTCGCTTCTCCGGCGCACTCAAATGTCACTTCGGCAAGCCCTGT 1296 51.77 KKRFFMISVLLLLGVVAHANIGEFDDYWKHREEEAKAAALDAYDPNPEAVADSLNAQVGKAIAGTNSTRRNLKKTKGPCRGTNPIDRCWRCDPNWANDRKKLATCALGFGHQTTGGKGGRFYVVTDASDSDLINPKPGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVNSHKTIDARGSDVHIAFGAGITVQFVKNVIIHGLHIHDIVSGTGGLIRDSVDHYGFRTRSDGDGISIYGSSNIWIDHVSMSNCQDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDAIMQITVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLMLNGAFFVRSGDQSKRRPYHKLDMISYKPGTFVSRLTRFSGALKCHFGKPC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 818412 820208 + Bma030169 Bma01g00083 74600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 105 122 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 229 250 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 129 154 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 403 426 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 165 181 IPR018082 -
Bma01g00083 432 PRINTS Pollen allergen Amb family signature 373 397 IPR018082 -
Bma01g00083 432 PANTHER PECTATE LYASE 4 432 - -
Bma01g00083 432 SMART amb_all 157 354 IPR002022 -
Bma01g00083 432 Gene3D - 82 425 IPR012334 -
Bma01g00083 432 SUPERFAMILY Pectin lyase-like 83 423 IPR011050 -
Bma01g00083 432 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570
Bma01g00083 432 Pfam Pectate lyase 166 348 IPR002022 -
Bma01g00083 432 PANTHER PECTATE LYASE 18-RELATED 4 432 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00083 Bma-Chr1:818412 Bma02g00407 Bma-Chr2:6245887 0 dispersed
Bma01g00083 Bma-Chr1:818412 Bma06g00671 Bma-Chr6:35999301 0 wgd
Bma01g00083 Bma-Chr1:818412 Bma06g00660 Bma-Chr6:35657954 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00083 K01728 - csv:101206497 685.256