Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00085 ATGAAAATTATCCATGGGGATCCCGCTCTTCAAGCACAGAGGGTGGCTGCAATCAAGAAAGCCAAAGGAAGTGATGCAGCGAGAAAGAAAGCCTCAGACGCTCTAAAAGCTTTCTTTAGTGACCCGGAAAACCGAAGGCTGAGGAGTATAGCCATGAAAGGTGTCAAGTTTTACTGCAAAAACTGTGGAAAGGAGGGCCATAGAAGACACTACTGTCCAGAACTTGGCTTGGTCAGCCGGAAGTTCAAATGTCGAGCATGTGGCGAAAAGGGGCATAATATGAGAACTTGTAAGAAGTTGAGGATGACAGATGAAAAGCTCGAATTTAGGAAGGATAAGCATTGCAGAATATGTGGGGAAAGTGGTCACAACAGAAGGACTTGCCCGGCTTTGGTTTTGGTTTCTAAATCTAAATCTAAACTAAGCAATGAAAATGGTAAGGCGAAGCTTCGTAGCTGCCGAATTTGTCGTCAAATGGGTCATAATCGGCGAAAGTGTCTGACGAAGATGACGATAAATTTATCCGAAATGGACGGTAAAGCTATTGTTTTGAAGTATAGGAGAAGGAAATATACTTGCAGGTTTTGCGGAGATGACAGGCATAATGTAAGGACATGCCCTGATCGGAAAGATGAATTACTTGTAGATCAATTGACCAATTGA 663 42.99 MKIIHGDPALQAQRVAAIKKAKGSDAARKKASDALKAFFSDPENRRLRSIAMKGVKFYCKNCGKEGHRRHYCPELGLVSRKFKCRACGEKGHNMRTCKKLRMTDEKLEFRKDKHCRICGESGHNRRTCPALVLVSKSKSKLSNENGKAKLRSCRICRQMGHNRRKCLTKMTINLSEMDGKAIVLKYRRRKYTCRFCGDDRHNVRTCPDRKDELLVDQLTN 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 967531 968519 - Bma000251.1 Bma01g00085 74602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00085 220 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 1 138 - -
Bma01g00085 220 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 137 211 - -
Bma01g00085 220 ProSiteProfiles Zinc finger CCHC-type profile. 115 129 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 SUPERFAMILY Retrovirus zinc finger-like domains 56 100 IPR036875 GO:0003676|GO:0008270
Bma01g00085 220 SUPERFAMILY Retrovirus zinc finger-like domains 110 130 IPR036875 GO:0003676|GO:0008270
Bma01g00085 220 SUPERFAMILY Retrovirus zinc finger-like domains 143 210 IPR036875 GO:0003676|GO:0008270
Bma01g00085 220 SMART c2hcfinal6 152 168 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 SMART c2hcfinal6 58 74 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 SMART c2hcfinal6 83 99 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 SMART c2hcfinal6 114 130 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 SMART c2hcfinal6 192 208 IPR001878 GO:0003676|GO:0008270
Bma01g00085 220 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 1 138 - -
Bma01g00085 220 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 137 211 - -
Bma01g00085 220 Gene3D - 109 178 - -
Bma01g00085 220 Gene3D - 56 108 - -
Bma01g00085 220 ProSiteProfiles Zinc finger CCHC-type profile. 83 99 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00085 - - - rcu:107261319 235.343
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00085 Bma-Chr1:967531 Bma14g01969 Bma-Chr14:42684060 7.60E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g859 Blo01g00419 . Bda01g02170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0976 Cone19ag0968 . . . . . . . . . . . Bpe02g02356 Bma01g00085 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005460 6 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00085 Bma_Chr01 FPKM 4.940042 5.274938 2.088823 2.307542 2.354117 2.652889 2.986795 2.941354 2.712267 3.024396