Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00088 ATGTCAAGCAATTGGATGGCTTTCTTCCCTGCAAATTTCATCCCACAAGTTCCCCAGGAAGATGAACATCAACCTCCCTCTACTCTGAACTCGATTCTTCCCCCGTGTACTCCTCAGGACTTTCATGGAGTGGCGTCGTTTTTAGGGAAGAGATCCATGTCGTTTTCTGGAATTGAAATGGGTGAGGAAGCAAACAATGGGGAGGATGATTTGTCGGACGATGGATCGCAAGCAGGAGAGAAGAAGAGGAGGCTAAACATGGAGCAGGTGAAGACTCTGGAGAAGAACTTCGAGCTGGGAAATAAGCTGGAGCCGGAGAGAAAAATGCAGTTGGCTCGAACTCTTAATCTGCAGCCTCGACAGATTGCGATTTGGTTTCAGAACAGAAGAGCTAGGTGGAAGACGAAGCAGTTGGAGAAAGATTACGATCTTCTCAAACGACAGTTCGAAGCCATTAAAGCTGATAACGAAGCGCTACAGACCCAGAATCAAAAGCTTCAGGCTGAGATATTGGCTCTGAAAAGTAGAGAGCCTACAGAATCGATCAATCTGAACAAAGAAACAGAAGGATCATGCAGCAACCGGAGCGAGAACAGCTCCGATGTAAAACTGGATATTTCTAGAACACCCGCCATCGATAGCCCTTTACCCAACCATCCAACGAGAAGGCCTTTGTTTCCAGCCGCCATTAGAGCGCCTGGCGTAGCTCAGCTCTTTCAGAACCCATCGAGATCTGAGCTCCATTGCCATAAGATCGAACAGATGGGGAAAGAAGAAAGCCTCAGCAACATGTTTTGCGGGATCGATGATCAGTCCGGTGGGCTGTGGCCGTGGTTGGAGAATCAACATTTTAAT 855 47.72 MSSNWMAFFPANFIPQVPQEDEHQPPSTLNSILPPCTPQDFHGVASFLGKRSMSFSGIEMGEEANNGEDDLSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARTLNLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKADNEALQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDVKLDISRTPAIDSPLPNHPTRRPLFPAAIRAPGVAQLFQNPSRSELHCHKIEQMGKEESLSNMFCGIDDQSGGLWPWLENQHFN 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 994635 995884 - Bma030170 Bma01g00088 74605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00088 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 285 IPR045224 GO:0003700
Bma01g00088 285 MobiDBLite consensus disorder prediction 61 85 - -
Bma01g00088 285 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Bma01g00088 285 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Bma01g00088 285 SMART HOX_1 79 140 IPR001356 GO:0003677
Bma01g00088 285 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Bma01g00088 285 Coils Coil 128 176 - -
Bma01g00088 285 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Bma01g00088 285 MobiDBLite consensus disorder prediction 184 201 - -
Bma01g00088 285 MobiDBLite consensus disorder prediction 181 201 - -
Bma01g00088 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 285 - -
Bma01g00088 285 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Bma01g00088 285 Gene3D - 73 142 - -
Bma01g00088 285 CDD homeodomain 81 137 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00088 Bma14g01636 CCT
Bma01g00088 Bma14g01636 ECH
Bma01g00088 Bma06g00675 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00088 Bma-Chr1:994635 Bma14g01608 Bma-Chr14:33712885 6.74E-127 dispersed
Bma01g00088 Bma-Chr1:994635 Bma14g01636 Bma-Chr14:34559003 1.81E-127 wgd
Bma01g00088 Bma-Chr1:994635 Bma06g00675 Bma-Chr6:36232778 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56600 PF00046 Homeodomain 8.30E-15 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00088 K09338 - qsu:112032056 471.085