Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00089 ATGGCCGCAAAGTCTGACTCGGTGTCGATCCGGGTTCCATACAGAAACCTGAGAGATGCAGAGGTAGAATTGGCAAGTTTGGATGAGCCTCGCCACCAACGTATTGAGCTCACTTCAACGTCGCCTTCTTCTTCCGGTAGAGTTTCCGAGGGCAGCTCCAACATTTCACCGTCAAATCCTCCTGTGCGACCCAAGCATAGCAGATTGATTACTCTAATTCTTAGTTGTATGGTCGCTGCTGGTGTTCAATTCGGCTGGGCCTTGCAACTTTCTCTTCTAACTCCTTATATACAGACTCTTGGGATAGAGCATGCTTTCTCTTCATTTATTTGGCTTTGTGGCCCTATTACAGGTCTTGTGGTTCAACCATGTGTTGGTATCTGGAGTGATAAATGTTATTCAAAATATGGAAGGCGACGACCATTTATTCTTGCGGGATCCTTTCTTATCTCAGTCGCTGTGGTATTAATCGGATTTTCTGCAGACATTGGATATTTATTAGGGGATACAAATGAAGACTGCAGAACATTCAAAGGTACTCGAGTAAGGGCAGCTTTTGTGTTTATTATTGGATTCTGGATGCTAGATCTTGCTAATAATACAGTGCAGGGACCAGCTCGTGCTCTTCTGGCTGATCTCTCAGGCCCTGAGCAACGCAATACAGCAAATGCAGTCTTTTGTTCATGGATGGCTGTTGGAAACATACTAGGATTCTCTTCTGGAGCTAGTGGAAATTGGCATAGATGGTTTCCCTTCCTGTTGACTAGAGCTTGCTGTGAAGCCTGTGGGAATCTTAAAGCAGCATTTCTTGTTGCAGTGATATTCTTGACATTATGTACTCTTGTGACCATATATTTTGCTGATGAAGCTCCACTTATTAGAAATGAACCACAACGTCTATCGGATTCTGCTCCTTTGTTGAATGATCATCCACAAAATGGTCTGGACCTATTAAAGTCTAAACCCCACATGACTTTTAAACACAATGCCAATGGCAATGATAAAGAGTTTGACTATGAAAGGAGTCAAAACTTGAAGGATAGTGGTTCAAAAATTGAGGAAGATTCAAGCGAAAGTTTTAATGACGGCCCCTGGAGGAGTGCTAGTCAAATTGCTTACCAGCTTAAGGAATTTACCACCTCCCATGTATTCAGTACTTATTGTTATGGCTCTTACTTGGTTGGCATGGTTTCCCTTCTTTCTTTTTGA 1209 42.68 MAAKSDSVSIRVPYRNLRDAEVELASLDEPRHQRIELTSTSPSSSGRVSEGSSNISPSNPPVRPKHSRLITLILSCMVAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCYSKYGRRRPFILAGSFLISVAVVLIGFSADIGYLLGDTNEDCRTFKGTRVRAAFVFIIGFWMLDLANNTVQGPARALLADLSGPEQRNTANAVFCSWMAVGNILGFSSGASGNWHRWFPFLLTRACCEACGNLKAAFLVAVIFLTLCTLVTIYFADEAPLIRNEPQRLSDSAPLLNDHPQNGLDLLKSKPHMTFKHNANGNDKEFDYERSQNLKDSGSKIEEDSSESFNDGPWRSASQIAYQLKEFTTSHVFSTYCYGSYLVGMVSLLSF 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1005691 1010530 - Bma000254.1 Bma01g00089 74606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00089 402 PANTHER SUGAR TRANSPORTER 40 365 - -
Bma01g00089 402 SUPERFAMILY MFS general substrate transporter 68 302 IPR036259 -
Bma01g00089 402 CDD MFS_SLC45_SUC 72 322 - -
Bma01g00089 402 Pfam Major Facilitator Superfamily 78 301 IPR011701 GO:0022857|GO:0055085
Bma01g00089 402 Gene3D MFS general substrate transporter like domains 63 328 IPR036259 -
Bma01g00089 402 MobiDBLite consensus disorder prediction 28 64 - -
Bma01g00089 402 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 40 365 - -
Bma01g00089 402 MobiDBLite consensus disorder prediction 36 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00089 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - jre:108988791 525.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00089 Bma-Chr1:1005691 Bma05g00740 Bma-Chr5:43572069 2.05E-78 dispersed
Bma01g00089 Bma-Chr1:1005691 Bma01g02572 Bma-Chr1:83321177 2.83E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g880 Blo01g00422 . Bda01g02166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0603 Cone9ag0608 . . . . . . . . . Bpe02g02352 Bma01g00089 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00182 . 13 495 Sucrose Transporter Gene Family AT1G22710 64.2 5.3e-178 620.9
Bma02g00183 . 17 492 Sucrose Transporter Gene Family AT1G22710 64.3 8.5e-176 613.6
Bma14g00823 . 17 492 Sucrose Transporter Gene Family AT1G22710 62.0 9.1e-170 593.6
Bma02g00180 . 17 477 Sucrose Transporter Gene Family AT1G22710 63.0 1.0e-168 590.1
Bma05g00740 . 17 450 Sucrose Transporter Gene Family AT1G22710 59.8 1.2e-158 556.6
Bma01g02572 CCT 28 452 Sucrose Transporter Gene Family AT1G22710 53.3 4.9e-131 464.9
Bma05g00725 . 2 281 Sucrose Transporter Gene Family AT1G22710 57.1 3.0e-88 322.8
Bma01g00089 . 68 291 Sucrose Transporter Gene Family AT1G22710 51.8 5.7e-63 238.8
Bma02g00183 . 9 477 Sucrose Transporter Gene Family AT2G14670 62.2 7.9e-171 597.0
Bma02g00182 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.4 6.7e-170 594.0
Bma14g00823 . 8 476 Sucrose Transporter Gene Family AT2G14670 61.4 9.1e-167 583.6
Bma02g00180 . 8 477 Sucrose Transporter Gene Family AT2G14670 60.8 3.5e-166 581.6
Bma05g00740 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.6 6.5e-157 550.8
Bma01g02572 CCT 13 452 Sucrose Transporter Gene Family AT2G14670 53.0 8.6e-133 470.7
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT2G14670 55.5 7.1e-87 318.2
Bma01g00089 . 67 289 Sucrose Transporter Gene Family AT2G14670 50.2 5.9e-65 245.4
Bma02g00183 . 10 400 Sucrose Transporter Gene Family AT1G66570 61.1 7.9e-141 497.3
Bma02g00182 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.3 1.0e-140 496.9
Bma14g00823 . 2 405 Sucrose Transporter Gene Family AT1G66570 60.6 2.0e-139 492.7
Bma02g00180 . 15 405 Sucrose Transporter Gene Family AT1G66570 60.6 5.3e-137 484.6
Bma05g00740 . 15 374 Sucrose Transporter Gene Family AT1G66570 61.2 6.7e-132 467.6
Bma01g02572 CCT 24 420 Sucrose Transporter Gene Family AT1G66570 53.4 4.1e-121 431.8
Bma05g00725 . 1 284 Sucrose Transporter Gene Family AT1G66570 55.2 5.1e-87 318.5
Bma02g00169 CCT 15 180 Sucrose Transporter Gene Family AT1G66570 71.0 2.0e-67 253.4
Bma01g00089 . 155 364 Sucrose Transporter Gene Family AT2G02860 61.8 2.2e-66 250.0
Bma02g00182 . 1 480 Sucrose Transporter Gene Family AT5G06170 60.8 2.2e-160 562.4
Bma02g00183 . 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.2e-160 562.4
Bma14g00823 . 5 476 Sucrose Transporter Gene Family AT5G06170 59.5 1.5e-156 549.7
Bma02g00180 . 5 477 Sucrose Transporter Gene Family AT5G06170 58.7 9.4e-156 547.0
Bma05g00740 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.8 6.1e-147 517.7
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT5G06170 50.7 2.6e-121 432.6
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT5G06170 51.2 1.9e-76 283.5
Bma02g00183 . 9 477 Sucrose Transporter Gene Family AT5G43610 61.4 4.1e-167 584.7
Bma02g00182 . 12 480 Sucrose Transporter Gene Family AT5G43610 61.6 1.2e-166 583.2
Bma14g00823 . 9 476 Sucrose Transporter Gene Family AT5G43610 60.6 2.7e-163 572.0
Bma02g00180 . 9 477 Sucrose Transporter Gene Family AT5G43610 59.4 1.1e-161 566.6
Bma05g00740 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 7.5e-153 537.3
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT5G43610 53.1 1.2e-129 460.3
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT5G43610 55.5 1.6e-86 317.0
Bma01g00089 . 78 289 Sucrose Transporter Gene Family AT5G43610 50.9 2.9e-64 243.0
Bma01g02572 CCT 25 452 Sucrose Transporter Gene Family AT1G09960 74.1 6.9e-186 647.1
Bma02g00180 . 11 483 Sucrose Transporter Gene Family AT1G09960 50.8 3.6e-134 475.3
Bma02g00183 . 12 482 Sucrose Transporter Gene Family AT1G09960 51.6 1.2e-132 470.3
Bma02g00182 . 23 486 Sucrose Transporter Gene Family AT1G09960 50.6 1.3e-131 466.8
Bma01g00089 . 56 292 Sucrose Transporter Gene Family AT1G09960 51.0 1.8e-64 243.8
Bma02g00169 CCT 11 184 Sucrose Transporter Gene Family AT1G09960 61.5 3.1e-61 233.0
Bma02g00182 . 13 494 Sucrose Transporter Gene Family AT1G71880 62.0 1.3e-171 599.7
Bma02g00183 . 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 4.1e-170 594.7
Bma14g00823 . 10 491 Sucrose Transporter Gene Family AT1G71880 59.5 1.8e-165 579.3
Bma02g00180 . 10 491 Sucrose Transporter Gene Family AT1G71880 58.9 2.2e-163 572.4
Bma05g00740 . 10 464 Sucrose Transporter Gene Family AT1G71880 56.0 9.2e-154 540.4
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT1G71880 54.0 9.6e-127 450.7
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT1G71880 55.2 1.4e-85 313.9
Bma02g00183 . 10 492 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-166 581.6
Bma02g00182 . 13 495 Sucrose Transporter Gene Family AT1G71890 59.3 2.2e-163 572.4
Bma14g00823 . 15 492 Sucrose Transporter Gene Family AT1G71890 59.3 5.4e-162 567.8
Bma02g00180 . 15 477 Sucrose Transporter Gene Family AT1G71890 60.0 9.2e-162 567.0
Bma05g00740 . 15 450 Sucrose Transporter Gene Family AT1G71890 58.1 1.1e-154 543.5
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT1G71890 50.3 3.2e-122 435.6
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT1G71890 52.1 3.3e-79 292.7
Bma01g00089 . 58 289 Sucrose Transporter Gene Family AT1G71890 50.9 3.0e-64 243.0
Bma02g00182 . 13 494 Sucrose Transporter Gene Family AT1G71880 62.0 1.3e-171 599.7
Bma02g00183 . 10 491 Sucrose Transporter Gene Family AT1G71880 61.3 4.1e-170 594.7
Bma14g00823 . 10 491 Sucrose Transporter Gene Family AT1G71880 59.5 1.8e-165 579.3
Bma02g00180 . 10 491 Sucrose Transporter Gene Family AT1G71880 58.9 2.2e-163 572.4
Bma05g00740 . 10 464 Sucrose Transporter Gene Family AT1G71880 56.0 9.2e-154 540.4
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT1G71880 54.0 9.6e-127 450.7
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT1G71880 55.2 1.4e-85 313.9
Bma02g00182 . 13 495 Sucrose Transporter Gene Family AT1G22710 64.2 5.3e-178 620.9
Bma02g00183 . 17 492 Sucrose Transporter Gene Family AT1G22710 64.3 8.5e-176 613.6
Bma14g00823 . 17 492 Sucrose Transporter Gene Family AT1G22710 62.0 9.1e-170 593.6
Bma02g00180 . 17 477 Sucrose Transporter Gene Family AT1G22710 63.0 1.0e-168 590.1
Bma05g00740 . 17 450 Sucrose Transporter Gene Family AT1G22710 59.8 1.2e-158 556.6
Bma01g02572 CCT 28 452 Sucrose Transporter Gene Family AT1G22710 53.3 4.9e-131 464.9
Bma05g00725 . 2 281 Sucrose Transporter Gene Family AT1G22710 57.1 3.0e-88 322.8
Bma01g00089 . 68 291 Sucrose Transporter Gene Family AT1G22710 51.8 5.7e-63 238.8
Bma01g00089 . 155 364 Sucrose Transporter Gene Family AT2G02860 61.8 2.2e-66 250.0
Bma01g02572 CCT 25 452 Sucrose Transporter Gene Family AT1G09960 74.1 6.9e-186 647.1
Bma02g00180 . 11 483 Sucrose Transporter Gene Family AT1G09960 50.8 3.6e-134 475.3
Bma02g00183 . 12 482 Sucrose Transporter Gene Family AT1G09960 51.6 1.2e-132 470.3
Bma02g00182 . 23 486 Sucrose Transporter Gene Family AT1G09960 50.6 1.3e-131 466.8
Bma01g00089 . 56 292 Sucrose Transporter Gene Family AT1G09960 51.0 1.8e-64 243.8
Bma02g00169 CCT 11 184 Sucrose Transporter Gene Family AT1G09960 61.5 3.1e-61 233.0
Bma02g00183 . 10 492 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-166 581.6
Bma02g00182 . 13 495 Sucrose Transporter Gene Family AT1G71890 59.3 2.2e-163 572.4
Bma14g00823 . 15 492 Sucrose Transporter Gene Family AT1G71890 59.3 5.4e-162 567.8
Bma02g00180 . 15 477 Sucrose Transporter Gene Family AT1G71890 60.0 9.2e-162 567.0
Bma05g00740 . 15 450 Sucrose Transporter Gene Family AT1G71890 58.1 1.1e-154 543.5
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT1G71890 50.3 3.2e-122 435.6
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT1G71890 52.1 3.3e-79 292.7
Bma01g00089 . 58 289 Sucrose Transporter Gene Family AT1G71890 50.9 3.0e-64 243.0
Bma02g00183 . 9 477 Sucrose Transporter Gene Family AT5G43610 61.4 4.1e-167 584.7
Bma02g00182 . 12 480 Sucrose Transporter Gene Family AT5G43610 61.6 1.2e-166 583.2
Bma14g00823 . 9 476 Sucrose Transporter Gene Family AT5G43610 60.6 2.7e-163 572.0
Bma02g00180 . 9 477 Sucrose Transporter Gene Family AT5G43610 59.4 1.1e-161 566.6
Bma05g00740 . 9 450 Sucrose Transporter Gene Family AT5G43610 56.5 7.5e-153 537.3
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT5G43610 53.1 1.2e-129 460.3
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT5G43610 55.5 1.6e-86 317.0
Bma01g00089 . 78 289 Sucrose Transporter Gene Family AT5G43610 50.9 2.9e-64 243.0
Bma02g00183 . 10 400 Sucrose Transporter Gene Family AT1G66570 61.1 7.9e-141 497.3
Bma02g00182 . 13 408 Sucrose Transporter Gene Family AT1G66570 61.3 1.0e-140 496.9
Bma14g00823 . 2 405 Sucrose Transporter Gene Family AT1G66570 60.6 2.0e-139 492.7
Bma02g00180 . 15 405 Sucrose Transporter Gene Family AT1G66570 60.6 5.3e-137 484.6
Bma05g00740 . 15 374 Sucrose Transporter Gene Family AT1G66570 61.2 6.7e-132 467.6
Bma01g02572 CCT 24 420 Sucrose Transporter Gene Family AT1G66570 53.4 4.1e-121 431.8
Bma05g00725 . 1 284 Sucrose Transporter Gene Family AT1G66570 55.2 5.1e-87 318.5
Bma02g00169 CCT 15 180 Sucrose Transporter Gene Family AT1G66570 71.0 2.0e-67 253.4
Bma02g00183 . 9 477 Sucrose Transporter Gene Family AT2G14670 62.2 7.9e-171 597.0
Bma02g00182 . 12 480 Sucrose Transporter Gene Family AT2G14670 62.4 6.7e-170 594.0
Bma14g00823 . 8 476 Sucrose Transporter Gene Family AT2G14670 61.4 9.1e-167 583.6
Bma02g00180 . 8 477 Sucrose Transporter Gene Family AT2G14670 60.8 3.5e-166 581.6
Bma05g00740 . 8 450 Sucrose Transporter Gene Family AT2G14670 57.6 6.5e-157 550.8
Bma01g02572 CCT 13 452 Sucrose Transporter Gene Family AT2G14670 53.0 8.6e-133 470.7
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT2G14670 55.5 7.1e-87 318.2
Bma01g00089 . 67 289 Sucrose Transporter Gene Family AT2G14670 50.2 5.9e-65 245.4
Bma02g00182 . 1 480 Sucrose Transporter Gene Family AT5G06170 60.8 2.2e-160 562.4
Bma02g00183 . 5 477 Sucrose Transporter Gene Family AT5G06170 61.1 2.2e-160 562.4
Bma14g00823 . 5 476 Sucrose Transporter Gene Family AT5G06170 59.5 1.5e-156 549.7
Bma02g00180 . 5 477 Sucrose Transporter Gene Family AT5G06170 58.7 9.4e-156 547.0
Bma05g00740 . 5 450 Sucrose Transporter Gene Family AT5G06170 55.8 6.1e-147 517.7
Bma01g02572 CCT 27 452 Sucrose Transporter Gene Family AT5G06170 50.7 2.6e-121 432.6
Bma05g00725 . 1 281 Sucrose Transporter Gene Family AT5G06170 51.2 1.9e-76 283.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00089 Bma_Chr01 FPKM 13.723402 15.537013 11.876639 14.416289 11.378431 13.31091 11.948732 18.852743 19.854748 20.35191