Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00101 ATGCAGAGAGAAGAGCAGCTTCCTCTTTCATACCAACCAGGCAAGGGCACCACCTTTCTCAGAACTTGCCTCAACGGCATCAACGCCTTGTCAGGTGTGGGAATATTGTCGATTCCCTATGCCCTAGCTCAGGGAGGATGGCTAAGCCTAATCCTTCTCTTCTTGGTGGCGACTCTCTGCTGGTACACAGGATTGCTTCTAAAGAGATGCATGGATTCAAACCCATCGATCAAAACCTACCCAGACATAGGAGAGAAAGCATTCGGGTACAGAGGAAGAGCCATAGTCTCCATCGTCATGTACCTGGAGCTTTATCTAGTTGCGGTTGAATTTCTCATTTTAGAAGGAGATAATCTGGAAAAATTGTTTCCAAACATGGGCTTCAAAATAGGAAACCTTGAAGTAGAATCCAAACAGGCCTTTGTTCTTCTGTCAGCTCTGGTAATACTGCCCACCACGTGGATGAAGAATCTAGGTGTTCTTGCTTACGTGTCTTCCGGTGGGGTTCTAGCTTCTGTTGCTCTGGTTTTCTTCGTTTTCTGGGCCGGTGCTTTCGATGGCGTCGGATTTCATCATCAATTAGATTTTGATGAGTCTTTGCTTCGTTTTAGAGGACTTCCGACGACAATAAGCTTGTTTACCTTTTCTTATTGTGGACATGCAGTTTTTCCCATGCTATGTGATTCCATCAGAGACAGAAGTCAGTTTTCCAAGGTCTTGATTGTTTGCTTCATTGCAAGCACAATCAACTATGGATCGATGGCTGTTCTGGGCTACCTCATGTATGGAAAGTATTCAAAATCTCAAATTACATTAAATCTTCCCATCAACAAATTGAGTACAAAACTAGCAATTTACACTACACTAGTCAATCCTTTTACTAAGTATGCAGTCATGATAAGTCCAATCTCTGCCGCGCTCGAAGAAAACATTCCTCTTAGTCGTATCCGACCAGTCAGCATTTTAATTCGAAGCCTCCTTGTGATTAGCACGGTCTTTGTGGCTCTCGCTGTTCCATTTTTCGGCTACATTATGGCGTTTATTGGAGCATTTCTAAGTGTTTTTGTGTCGATGTTGTTTCCATGCTTCTGCTACCTTAAGATTAAGAACGATGCGAGAGAGTTTGGATTGGAGTTGATAATAATTTGTGGGATTTTGTTGATGGGAGTTATTGTTGGAGTGACAGGTACTTATAGTTCTCTTGTACAAATTGTACATCATCTTTGA 1227 42.46 MQREEQLPLSYQPGKGTTFLRTCLNGINALSGVGILSIPYALAQGGWLSLILLFLVATLCWYTGLLLKRCMDSNPSIKTYPDIGEKAFGYRGRAIVSIVMYLELYLVAVEFLILEGDNLEKLFPNMGFKIGNLEVESKQAFVLLSALVILPTTWMKNLGVLAYVSSGGVLASVALVFFVFWAGAFDGVGFHHQLDFDESLLRFRGLPTTISLFTFSYCGHAVFPMLCDSIRDRSQFSKVLIVCFIASTINYGSMAVLGYLMYGKYSKSQITLNLPINKLSTKLAIYTTLVNPFTKYAVMISPISAALEENIPLSRIRPVSILIRSLLVISTVFVALAVPFFGYIMAFIGAFLSVFVSMLFPCFCYLKIKNDAREFGLELIIICGILLMGVIVGVTGTYSSLVQIVHHL 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1065696 1067627 + Bma000266.1 Bma01g00101 74618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00101 408 PANTHER OS05G0424000 PROTEIN-RELATED 13 406 - -
Bma01g00101 408 PANTHER OS06G0228500 PROTEIN 13 406 - -
Bma01g00101 408 Pfam Transmembrane amino acid transporter protein 16 393 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00101 K15015 SLC32A, VGAT; solute carrier family 32 (vesicular inhibitory amino acid transporter) - pop:7498172 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00101 Bma-Chr1:1065696 Bma02g00415 Bma-Chr2:6335925 4.29E-33 dispersed
Bma01g01037 Bma-Chr1:10840729 Bma01g00101 Bma-Chr1:1065696 5.43E-154 transposed
Bma04g00515 Bma-Chr4:4550171 Bma01g00101 Bma-Chr1:1065696 3.03E-18 transposed
Bma04g00676 Bma-Chr4:6469748 Bma01g00101 Bma-Chr1:1065696 2.39E-81 transposed
Bma08g01155 Bma-Chr8:50572797 Bma01g00101 Bma-Chr1:1065696 1.33E-125 transposed
Bma10g00234 Bma-Chr10:2147201 Bma01g00101 Bma-Chr1:1065696 1.98E-117 transposed
Bma01g00101 Bma-Chr1:1065696 Bma03g00835 Bma-Chr3:7917799 1.99E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g918 Blo01g00429 . Bda01g02153 . . . . . Cmo04g01736 . . . . . . . Cpe01g01465 . . . . . . . . . . . . . . . . Cone6ag0582 . Lsi04g00425 Csa05g02453 Chy10g01003 Cme10g00414 . . . . . Bpe02g02340 Bma01g00101 . . . . Cma04g01658 . Car04g01698 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g01155 . 91 453 Amino Acid/Auxin Permease AAAP Family AT5G02170 54.0 4.3e-105 378.6
Bma10g00234 . 62 476 Amino Acid/Auxin Permease AAAP Family AT2G41190 69.5 1.7e-160 562.8
Bma08g01155 . 62 418 Amino Acid/Auxin Permease AAAP Family AT2G41190 50.3 3.2e-98 355.9
Bma14g01066 . 29 465 Amino Acid/Auxin Permease AAAP Family AT3G30390 73.7 1.0e-180 629.8
Bma02g00455 . 25 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 73.3 1.0e-180 629.8
Bma01g01037 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 59.4 1.2e-135 479.9
Bma01g00101 . 17 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 52.2 3.5e-108 388.7
Bma02g00455 . 20 457 Amino Acid/Auxin Permease AAAP Family AT5G38820 69.8 9.9e-176 613.2
Bma14g01066 . 24 463 Amino Acid/Auxin Permease AAAP Family AT5G38820 69.7 7.1e-174 607.1
Bma10g00835 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 65.6 1.0e-170 596.7
Bma10g00824 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 65.6 1.8e-170 595.9
Bma08g01155 . 81 485 Amino Acid/Auxin Permease AAAP Family AT5G02180 56.9 4.2e-128 455.3
Bma04g00676 . 16 503 Amino Acid/Auxin Permease AAAP Family AT3G09330 50.7 5.4e-125 444.9
Bma08g01155 . 96 484 Amino Acid/Auxin Permease AAAP Family AT3G09330 56.2 1.4e-117 420.2
Bma04g00676 . 57 503 Amino Acid/Auxin Permease AAAP Family AT3G09340 50.9 6.6e-123 438.0
Bma08g01155 . 96 484 Amino Acid/Auxin Permease AAAP Family AT3G09340 55.9 1.1e-117 420.6
Bma08g01155 . 1 418 Amino Acid/Auxin Permease AAAP Family AT2G39130 75.4 1.0e-173 606.7
Bma01g01037 . 97 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.7 1.2e-106 383.3
Bma03g00213 . 11 436 Amino Acid/Auxin Permease AAAP Family AT3G56200 61.7 1.0e-137 486.9
Bma08g01155 . 1 432 Amino Acid/Auxin Permease AAAP Family AT3G54830 67.4 1.7e-158 556.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000580 6 2 3 3 5 2 3 2 2 5 2 2 3 4 3 3 2 4 3 2 3 4 5 3 4 3 6 3 5 7 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00101 Bma_Chr01 FPKM 24.195652 28.628414 3.855146 6.139822 0.164383 0.0 0.0 0.0 0.089235 0.0