Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00104 ATGTCCGCTTCCTTTGCGAACTCCACCACTCTCTTCCGCGCTCAAATCACCAACACTCAGAATCATCTTCTCCGGAGCCGCTCATATCCTGTCATCAAAGCCTCGTTCGGCGGCGAAGACAAGTGGAATCGCCGAAGAGACGTTCTTACGGTTATTCTGGCCACTTCGACGGCTCTTGGACTTCAGGCGACGCCGTTAGCGCAAGCTCAAAATTGGGGCACGCGTTCTTTTCTGAGAGAGAAATTTTTCGAGCCGGGACTGTCGCCGGAAGACGCGGTGGCGAGGATAAAGCAGACCGCAGAGGGTTTGCACAGTATAAGAGAAATGTTGGAGACGATGTCGTGGAGGTATGTGCTGTTTTATATTAGATTGAAGATCTCATACCTTTCGCAAGACTTGAAAAACGCCATGAGTACTTTGCCGGAATCTCGCCGAAGCGATTACGTGAAAACTGCAAATGAGCTGGTGGATAACATGTCTCAGCTGGATAAGTACGTCCGGACGCCGAAAATATACGAATCCTATCTATACTACGAGAAGTCATTGAAATCAATCGACCAACTTGTCGCGTTGCTTGTGTAA 582 48.97 MSASFANSTTLFRAQITNTQNHLLRSRSYPVIKASFGGEDKWNRRRDVLTVILATSTALGLQATPLAQAQNWGTRSFLREKFFEPGLSPEDAVARIKQTAEGLHSIREMLETMSWRYVLFYIRLKISYLSQDLKNAMSTLPESRRSDYVKTANELVDNMSQLDKYVRTPKIYESYLYYEKSLKSIDQLVALLV 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1107364 1108083 - Bma000269.1 Bma01g00104 74621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00104 193 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 3 192 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Bma01g00104 193 SUPERFAMILY Oxygen-evolving enhancer protein 3, 82 193 IPR023222 -
Bma01g00104 193 Gene3D - 51 192 IPR023222 -
Bma01g00104 193 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 69 191 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Bma01g00104 193 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC 3 192 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00104 K08901 psbQ; photosystem II oxygen-evolving enhancer protein 3 - oeu:111395812 264.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00104 Bma-Chr1:1107364 Bma13g01024 Bma-Chr13:42796824 1.56E-07 dispersed
Bma01g00104 Bma-Chr1:1107364 Bma11g00353 Bma-Chr11:3760179 4.55E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g932 Blo01g00431 . Bda01g02147 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0572 . . . . . . . . . . Bpe02g02336 Bma01g00104 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011253 3 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00104 Bma_Chr01 FPKM 32.401985 34.338913 18.188828 18.191397 4.208551 3.894888 5.099334 1.329625 1.243323 1.381133