Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00109 ATGGGTTTTCTCTTAGCTCAGCCTTCACCCTCAGCTTTCCTTGGCTCTCAAATCTCATGCAATCGCTTCTCTTTCATCACAAAGAGACCACTTCTGCAAACCAAACGACGAGTGCCTTTCATTATCAGCTCTATGGACTTAGACCCTTCGCTTCCGCTGTCAGTTAGAAACTTCTGGCAATGGCTTCGCGGCGAGGGCGTCGTCTCTGCGAAGACTCCGGTGAAGCCGGCTGTGGTCGCGGAAGGTCTGGGACTAGTAGCACAGAGAGACCTAGCGCGAAACGAGGTCGTTCTGGAAGTCCCAAAAAGGCTTTGGATTAATCCCGACGCTGTGGCTTCTTCAGACATTGGAAATGTGTGTAGTGGATTGAAACCATGGGTGTCTGTTGCTTTATTTTTGACGCGAGAGAAGTTGAGGGATGACTCTCCTTGGCGAATTTACCTTGATGTTCTTCCTAAGGATATTAATTCGACTGTATTCTGGTCAGAAGAGGAGCTTTCTGAGCTTCAAGGAACCCAACTTCTGAGCACGACATTGGGGGTGAAAGAATACGTGCAGAGCGAGTTTGTTAAAGTTGAAGAAGAGATTATTGTCCCTCACAAGCAGCTCTTCCCATTTCATATAACTTTGGAAGACTTCTTCTGGGCATTTGGTGTACTAAGATCAAGAGCATTTTCTCGACTTCGCGGTCAAAATCTTGTTGTGATCCCTTTTGCAGACTTGATCAATCATGGTACCCACATATCCTCGGAAGATCATGCACAAGAGGTTAAAGGACCAGCCGGCCTTTTCTCATGGGACACCCTGTTTTCTCTAAGGACTCCAGTTTCTGTCAAAGCCGGCGAGCAGGTTTTGATTCAATATGATCTGAAGAAGAGCAATGCTGAAATGGCTATGGACTATGGATTCGTAGAGACAAAAGAAAGTCGAAACGCATTTACACTAACACTCGAGATACTGGAGTCTGACCCCTTTTTTGGCGACAAATTGGACATTGCCGAGTTAAATGGATTGGGAGAGACTGCGTACTTCGACATTGTTCTAGACCAACCATTTCCCCCAACAATGCTTCCGTTTTTGCGCCTTCTAGCTCTCGGAGGAACTGACGCATTCCTCTTGGAATCTCTTTTCAGAAACTCTGTTTGGGGTCATCTTGGATTGCCTGTAAGCCGTGAAAATGAAGAGCTCATTTGTCGAGTGATTCGAGATGCTTGCAAGGCTGCACTTTCTGGCTATCATACCACCATTGAAGAGGATGAGAAGCTTCAAGAGGAAAATCTGAGTCCAAGACTAGAAATTGCTGTTGAAGTGAGAAAAGGAGAGAAGAAGGTGCTGAAGCAAATTGATGAAATCTTCAAGAAGAGGGAACTGGAACTGAATGAGTTAGAATACTACCAAGAAAGAAGGCTCAAGGACCTTGGCCTTTGTGGAGAACAAGGTGAAATCATCTTCTGGGAGCAGAAATAG 1467 45.67 MGFLLAQPSPSAFLGSQISCNRFSFITKRPLLQTKRRVPFIISSMDLDPSLPLSVRNFWQWLRGEGVVSAKTPVKPAVVAEGLGLVAQRDLARNEVVLEVPKRLWINPDAVASSDIGNVCSGLKPWVSVALFLTREKLRDDSPWRIYLDVLPKDINSTVFWSEEELSELQGTQLLSTTLGVKEYVQSEFVKVEEEIIVPHKQLFPFHITLEDFFWAFGVLRSRAFSRLRGQNLVVIPFADLINHGTHISSEDHAQEVKGPAGLFSWDTLFSLRTPVSVKAGEQVLIQYDLKKSNAEMAMDYGFVETKESRNAFTLTLEILESDPFFGDKLDIAELNGLGETAYFDIVLDQPFPPTMLPFLRLLALGGTDAFLLESLFRNSVWGHLGLPVSRENEELICRVIRDACKAALSGYHTTIEEDEKLQEENLSPRLEIAVEVRKGEKKVLKQIDEIFKKRELELNELEYYQERRLKDLGLCGEQGEIIFWEQK 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1127505 1130530 + Bma000273.1 Bma01g00109 74626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00109 488 SUPERFAMILY SET domain 54 309 IPR046341 -
Bma01g00109 488 Pfam SET domain 82 288 IPR001214 GO:0005515
Bma01g00109 488 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 34 482 - -
Bma01g00109 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 482 - -
Bma01g00109 488 CDD SET_RBCMT 66 304 IPR044431 GO:0016279|GO:0018022
Bma01g00109 488 Pfam Rubisco LSMT substrate-binding 321 445 IPR015353 -
Bma01g00109 488 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 313 485 IPR036464 -
Bma01g00109 488 PIRSF RMT_SET 3 488 IPR011192 GO:0009507|GO:0030785
Bma01g00109 488 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Bma01g00109 488 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 2 488 IPR011192 GO:0009507|GO:0030785
Bma01g00109 488 Gene3D - 305 469 IPR036464 -
Bma01g00109 488 Gene3D set domain protein methyltransferase, domain 1 53 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00109 K00592 RBCMT; [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase [EC:2.1.1.127 2.1.1.259] - zju:107428930 702.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00109 Bma-Chr1:1127505 Bma08g00685 Bma-Chr8:41981984 3.51E-24 dispersed
Bma01g00109 Bma-Chr1:1127505 Bma14g00819 Bma-Chr14:9115274 5.89E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g961 Blo01g00438 . Bda01g02141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00109 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007838 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56603 PF00856 SET 2.70E-07 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00109 Bma_Chr01 FPKM 23.391111 26.469984 46.58939 48.633614 25.92985 18.644007 20.288004 29.424984 27.90638 28.623985