Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00111 ATGTCTGCATCATACCTTCCAGCTACAACTGACTCAGTTGCTCAGGCTTTAGAAGCAAAAACTGCATCTGAAGCAATTTCTATCCTCTATCGGATTCTTGAAAACCCTTCATCTTCATCAGAGGCCCTGCGGATAAAAGAACAGGCCATCACAAATCTTTCTGATCTTCTTAGGCAAGAGAATCGAGCGGAGGATCTTCGGGGTCTTCTAACTCAACTGAGGCCTTTTTTTAACTTGATTCCAAAAGCAAAAACTGCAAAAATCGTTCGTGGAATAATCGATGCTGTGGCAAAAATACCTGGAACATCAGATCTCCAGATTTCGCTATGCAAAGAAATGGTGCAGTGGACCCGTGCTGAGAAGCGAACTTTCCTAAGGCAACGAGTAGAGGCCAGACTCGCAGCTCTTTTGATGGAAAATAAGGAGTATCCAGAAGCACTTAATCTTCTCTCAGGCTTAATTAAGGAAGTTAGAAGATTAGACGACAAGCTACTTCTTGTGGACATAGATTTGTTGGAGAGTAAGCTTCATTTTTCTTTAAGAAATCTCCCTAAAGCTAAGGCTGCACTGACAGCAGCAAGAACAGCTGCCAATGCCATATATGTGCCGCCAGCTCAGCAGGGAACTATTGACTTACAAAGTGGCATCCTCCATGCTGAAGAGAAGGATTACAAAACTGGTTACAGTTATTTCTTTGAAGCTTTTGAAGCTTTCAATGCACTTGAGGATCCCCGTGCTGTATTTAGCCTTAAGTATATGTTATTGTGCAAGATAATGGTTAATCAGTCTGATGACGTGGCAGGAATTATATCATCAAAGGCGGGACTGCAATATCTGGGGCCTGAGCTGGATGCAATGAAAGCGGTTGCTGATGCTCATTCCAAGCGCTCTCTGAAGCTTTTTGAGACTGCCCTTAGGGATTTTAAGGCTCAACTAGAGGAAGACCCTATTGTCCACAGACATCTTTCTTCTCTCTATGACACTCTCTTAGAGCAAAATCTCTGTAGGTTAATTGAACCTTTCTCGAGAGTTGAGATTACCCATATTGCTGAGCTAATTGAGCTGCCCATGGACCATGTGGAAAAGAAGTTATCTCAGATGATTCTTGATAAAAAGTTTGCAGGGACTTTAGATCAGGGAGCGGGATGCCTTGTGATTTTTGACGATCTTAAGACCGATGCTATTTATGAGGCTTCATTGGAAACAATTTCAAATATTGGCAAGGTGGTGGATAGTCTATATGTGAGATCTGCGAAGATTATGGCTTGA 1269 42.4 MSASYLPATTDSVAQALEAKTASEAISILYRILENPSSSSEALRIKEQAITNLSDLLRQENRAEDLRGLLTQLRPFFNLIPKAKTAKIVRGIIDAVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYPEALNLLSGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVNQSDDVAGIISSKAGLQYLGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEITHIAELIELPMDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDLKTDAIYEASLETISNIGKVVDSLYVRSAKIMA 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1133855 1135123 - Bma000275.1 Bma01g00111 74628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00111 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 3 422 - -
Bma01g00111 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Bma01g00111 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 3 422 - -
Bma01g00111 422 Gene3D - 46 421 - -
Bma01g00111 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Bma01g00111 422 Coils Coil 46 66 - -
Bma01g00111 422 Pfam PCI domain 285 386 IPR000717 -
Bma01g00111 422 SUPERFAMILY TPR-like 130 323 IPR011990 GO:0005515
Bma01g00111 422 SUPERFAMILY Winged helix DNA-binding domain 314 395 IPR036390 -
Bma01g00111 422 SMART PINT_4 320 403 IPR000717 -
Bma01g00111 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Bma01g00111 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00111 K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6 - jre:109003228 731.865
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00111 Bma06g00711 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00111 Bma-Chr1:1133855 Bma07g00297 Bma-Chr7:3691053 1.36E-19 dispersed
Bma01g00111 Bma-Chr1:1133855 Bma06g00711 Bma-Chr6:37719689 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g963 Blo01g00440 Blo16g01102 Bda01g02140 Bda11g01200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01200 . Bpe02g02328 Bma01g00111 Bma06g00711 . . . . . . . . Cpe07g00642 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004931 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 2 1 2 1 2 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00111 Bma_Chr01 FPKM 0.256487 0.599087 0.793882 1.158182 0.705511 0.691847 0.60756 0.0 0.0 0.0