Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00117 ATGGATGATGGAACGAAGGTTGATCTGGAAGATGAGTTCACAAGCGACGCGAGCTGGACTCTGGGAGATGTTACCGATACCGCTTACGTCTTCTCCGGTGGAAGAGAGAGTAGCATACTCGCCGAATTCGGCTGGAATTTTCCTCCTGCCGACGATGTGAACCGAACTAGTGAACTAGCTGGACGGTCAACTGACTTCGAAAGGATCTGTACGGATGATAGCTTCGAGTACGCTGCTCACGCCATGCCTCGGCTGGAGAGTAAATGCGAGATGCAGAACTTTAACGCAGCAGTTGCGGCGACATCGGTGTCAGCATCTAACCGTTCTTTATCTTCAAGCCCAAGCGAGGATCGGTCGGAAAAGAAGACGGGATCTGGCGGAAAACAGGCTGAGATACCGAGCAAGGTCCGTGAGAGGGGGCAAAAGCGGATACGACAGCCAAGATTTGCGTTTCTGACCAAGAGTGAGGTCGATAATCTTGAAGATGGGTATAGATGGAGAAAATATGGACAGAAAGCTGTTAAAAACAGTCCGTTCCCAAGCAGGAGTTACTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGGGTTGAGCGTTCATCGGAAGATCCTGCTATTGTGATAACCACATACGAAGGTCAACATTGCCATCACATTGTAGGATTATCTCGAAGTGGAGTCCTGAGACATTCTGCTTCCTTTGATGGTCAGTTTCCTCCTCACTTCTCCCAGTTTTATGACCCTGAAATTCAGCTTCCACCGGAGACTCCACTTAGTGTGCAACATTTACAGCCGGTACAATCATCCGGCCGGAGAAATAATGTGATTTCAGAGCCTAATTTCACAGTCCTATTCCTCATGATCAAGGATTGCTAG 879 48.58 MDDGTKVDLEDEFTSDASWTLGDVTDTAYVFSGGRESSILAEFGWNFPPADDVNRTSELAGRSTDFERICTDDSFEYAAHAMPRLESKCEMQNFNAAVAATSVSASNRSLSSSPSEDRSEKKTGSGGKQAEIPSKVRERGQKRIRQPRFAFLTKSEVDNLEDGYRWRKYGQKAVKNSPFPSRSYYRCTNSKCTVKKRVERSSEDPAIVITTYEGQHCHHIVGLSRSGVLRHSASFDGQFPPHFSQFYDPEIQLPPETPLSVQHLQPVQSSGRRNNVISEPNFTVLFLMIKDC 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1178049 1180000 + Bma000281.2 Bma01g00117 74634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00117 292 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 3 226 - -
Bma01g00117 292 MobiDBLite consensus disorder prediction 105 141 - -
Bma01g00117 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 226 IPR044810 GO:0003700
Bma01g00117 292 SUPERFAMILY WRKY DNA-binding domain 153 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g00117 292 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00117 292 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma01g00117 292 Gene3D WRKY domain 147 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma01g00117 292 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00117 Bma06g00731 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00117 Bma-Chr1:1178049 Bma02g00935 Bma-Chr2:49202332 2.32E-40 dispersed
Bma01g01860 Bma-Chr1:68157586 Bma01g00117 Bma-Chr1:1178049 2.23E-22 dispersed
Bma06g01340 Bma-Chr6:50333972 Bma01g00117 Bma-Chr1:1178049 4.75E-34 transposed
Bma01g00117 Bma-Chr1:1178049 Bma06g00731 Bma-Chr6:38296601 1.56E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56604 PF03106 WRKY 1.60E-23 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00117 - - jre:108981804 280.026