Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00120 ATGGCTTTGCTTTCTCGAAACCGAAACCTATTGAGATCCTTAAACTTCAACAATGCTTCCCTCATGAAGACCATCACATCCTTCGCGTTTCTTTCGCAAGAAGCTCAGCTCGCTACTGAACCTCCGCACACATCGTCTACTCCACTTCCTCCTAGTCCTTCATCTGGCAGTCCTCTCTACAACGAGAATTGGCGGAGCCCTATTCCTCACTCGTCGTTGACGCAGTCTATTATTCCGCTCGGATTCCTTAACCAGTCTCCGAACTCTCGAATGAAAGCATTGTCGGAGACGCTGGATCTTCAAAGCTTGTTGAATGTCTTCGCTGATAGGGTGGCCTCGCAACGATGGGCTGAAATGAAGCAACTTTTTGAACTTTGGATTCGGTCTTTGGACAAAAATGGAAAACCAAATATACCGGATGTGAACTTGTATAACAATTATTTGAGGGCTAATTTGATGATTGGAGCGTCGGCGGGGGAGCTTCTGGATCTGGTATCTCAAATGGGGGACTATGCTATCTCTCCGAACACAGCGTCTTATAATTTGGTTTTGAAGGCCATGTACCAATTTAAGGAGACTGATGCGGCTCAGAAATTGATTGAACGGATGCTGCAGACAGGAGAAGCCTCTATGCCTGATGATGAGTCATATGATTTGATGATTGGAATGCTATTTTCGTCGGACGAGATTGATACTGCATTGAAATACATAGACTTGACTTTAAAATCAGGTTCAATGCTGTCATTAAAGGTATTTACTGAATGTGTGCGGAGCTGTGTAAACAAGGGCAGGCTAGATTTGCTGGTTTCCATAATTGATAGGTGCAAGACAACTGTTCAGAATAAAGCTCTGTGTCCAAATTGGAATCTGTGCAATTATATTGCTGAAATTGCAATGCAAGAGGATAACAGTAAGTTAGCATTTCACGCCCTGGAGTTTATGGCCAGATGGATAGCTCGTGGTGAGAATGCAAGGCCCCCTGTTTATCTTTCTGTAGATGAAGGATTGGTTGTTTCAGCACTTGGAACTGCTTGTAGAACCTACAGTTCTACTCTTGTGGATGCATCATGGGCAATCCTAAAGCGTTCATTGCGTCAAAAGAAGGCTCCTAATCCAGAATCTTATCTTGGGAAAATACATGCCCTTGCATCGTCTGGTAATCTGCAAAGGGCTTTCAGTACTCTCCATGAATTTGAAACTGCCTACGGAAATTCTGATGTAGATAATCAAGAAGATTTGTTCTCTCCATTCACATGTTTGTACCCGTTGGTTTTAGCCTGCTCCAAAAAGGGTTTTGAGACTTTGGACTCGGTCTATTTCCAACTTGAGAACTTAAGCCGGGCAGATCCACCATACAAGTCTGTTGCAGCTTTAAATTGCATCATTTTGGGCTGTGCAAATATATGGGACATTGATCGTGCTTACCAAACTTTTGAGGCCATTGGGTCCACTTTTGGATTGACTCCGAACATTCATTCATATAACGCTCTGATGTATGCATTTGGAAAGCTCAAGAAGACATTTGAAGCTTCTAGGGTTTTTGAACATGCAATGAGTTTGGGGGTTAAATCAAATGCAACTTCTTATTCATTACTTGTGGATGCTCATCTCGTTAACAGAGACCAGAAGTCTGCTCTCTCTGTGATTGATGATTTGATTTCTGCTGGTTTTGAGCCATCAAAAGAAACGTTGAAGAAGGTGAGAAGACGATGCATTCGAGAAATGGACTATGATAGTGATGATCGGATTGATTCCATGGCTAAAAAGTTGATGATTCGAATGGGTTCAGAGAATCGCAGGGATATTCTTTTCAATCTTGAGTACAGCACCAATTATGTCTCATAG 1845 42.49 MALLSRNRNLLRSLNFNNASLMKTITSFAFLSQEAQLATEPPHTSSTPLPPSPSSGSPLYNENWRSPIPHSSLTQSIIPLGFLNQSPNSRMKALSETLDLQSLLNVFADRVASQRWAEMKQLFELWIRSLDKNGKPNIPDVNLYNNYLRANLMIGASAGELLDLVSQMGDYAISPNTASYNLVLKAMYQFKETDAAQKLIERMLQTGEASMPDDESYDLMIGMLFSSDEIDTALKYIDLTLKSGSMLSLKVFTECVRSCVNKGRLDLLVSIIDRCKTTVQNKALCPNWNLCNYIAEIAMQEDNSKLAFHALEFMARWIARGENARPPVYLSVDEGLVVSALGTACRTYSSTLVDASWAILKRSLRQKKAPNPESYLGKIHALASSGNLQRAFSTLHEFETAYGNSDVDNQEDLFSPFTCLYPLVLACSKKGFETLDSVYFQLENLSRADPPYKSVAALNCIILGCANIWDIDRAYQTFEAIGSTFGLTPNIHSYNALMYAFGKLKKTFEASRVFEHAMSLGVKSNATSYSLLVDAHLVNRDQKSALSVIDDLISAGFEPSKETLKKVRRRCIREMDYDSDDRIDSMAKKLMIRMGSENRRDILFNLEYSTNYVS 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1207096 1210563 - Bma000285.1 Bma01g00120 74637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00120 614 MobiDBLite consensus disorder prediction 37 61 - -
Bma01g00120 614 Gene3D Tetratricopeptide repeat domain 423 600 IPR011990 GO:0005515
Bma01g00120 614 TIGRFAM PPR: pentatricopeptide repeat domain 492 525 IPR002885 -
Bma01g00120 614 PANTHER OS07G0599000 PROTEIN 1 612 IPR044605 -
Bma01g00120 614 Gene3D Tetratricopeptide repeat domain 111 318 IPR011990 GO:0005515
Bma01g00120 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Bma01g00120 614 Pfam PPR repeat 493 521 IPR002885 -
Bma01g00120 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00120 Bma-Chr1:1207096 Bma03g00671 Bma-Chr3:5471359 5.70E-06 dispersed
Bma01g00120 Bma-Chr1:1207096 Bma01g01929 Bma-Chr1:71231246 1.09E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00120 - - vvi:100249185 922.154