Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00122 ATTGGTGGGATGAGACAGCTCAAGTTGATCTACCTGACTATTCTACTTATCCTATCAACTTTTCGGGAGGCTAGGTCACATGGTGATCAACCTCTCTCAAGAATTGCTATTCAAAAAACCACTCTTGCTTTTCATGAACAGGCTTATGTTAAAGCCTCTCCAGCTATTCTTGGATTTAAGGGGCAAACAACGGAATGGGTGAGTTTGGAGTATAGTTCTCCAAAGCCTTCAATCGATGATTGGATTGGCGTCTTTTCTCCTGCCAACTTCAGTTCTTCGACCTGTACTGCTGAAAACCCAAGAGCATATCCACCCTTTGTGTGTTCTGCTCCTATAAAGTTTCAATATGCAAATTACTCCAGCCCAGATTACAAAAACACAGGAAAAGGGTATTTGAAGCTTCAGCTGATAAACCAGAGATCAGATTTCTCTTTTGCATTATTTTCTGGTGGTTTATCAAATCCAAAGCTGGTTGCTGTATCAAATCACGTAGCATTTATGAATCCCAATGCTCCTCTTTACCCACGTTTAGCACAAGGAAAAACATGGAATGAAATGACTGTAACATGGACAAGCGGATATGACATTGATGAAGCAGAACCTTTTGTTGAATGGAACCTGAAAGGAGAGACTTTCACGCGCTCTCCTGCTGGGACTCTGACTTTTGATCAGTTTAGCATGTGTGGTGCACCAGCAAAAACGGTAGGATGGCGTGATCCTGGTTATATACACACTGGTTTTCTTAAGGATTTGTGGCCCAACAGACTTTATACATACAAACTAGGACACAGATTGTACAATGGAACATATATTTGGAGTTCAACATATCAATTTAAGGCCTCCCCATATCCTGGTCAAAAATCCTTGCAACGGGTCATCATTTTCGGCGACATGGGAAAGGATGAAGCTGATGGTTCCAATGAATATAACGATTTTCAGCAAGGTTCTCTTAATACTACCAGACAGCTCATTAGGGATTTGAAAAACTACGACATTGTTTTCCATATTGGAGATTTAAGTTATGCGAGTGGATACCTTTCTCAATGGGACCAATTTCTTGCACAAATTGAACCAATTGCTTCAACAGTACCGTACATGGTTGCTAGTGGTAATCATGAACGTGACTGGCCCAATTCAGGATCCTTCTATAACACCATGGATTCGGGTGGAGAGTGTGGAGTAGTTGCTGAAAGTATGTTCTATGTTCCGGCTGAAAACCGAGCAAAGTTCTGGTACTCCACTGACTATGGGATGTTCCGTTTCTGCGTTGCTGACACAGAACATGACTGGAGGGAGGGAACGGAGCAGTATAAGTTCATTGAACACTGCCTAGCTTCAGTCGATAGAAGAAAGCAACCATGGCTCATTTTTATGGCTCATCGGGTCCTGGGCTATTCTTCTGGTATTTTTTATGCTCAAGAGGGATCATTTGCTGAACCAATGGGGAGAGAGAGTCTTCAAAATCTTTGGCAGAAATATCGGGTTGATCTCGCCTTTTATGGTCATGTGCACAATTACGAGAGGACATGTCCCATATACCAGAATATTTGCACGAATGAGGAAAAACACCATTACAAAGGCGCCTTGAATGGAACAATACATGTAGTAGCGGGTGGCGGGGGAGCTGGACTTGCAGAATTTACCACTCTCGAAACAAAATGGAGTATTTCCAAGGACTATGACTTTGGATATGTGAAGCTCACAGCCTTCGATCATTCAAATCTTTTATTCGAGTACCAGAAGAGTAGCGATGGAAAAGTTTACGATTCATTCAAAATTTCTCGAGATTATCGGGACATTTTGGCCTGCACGGTCGACAGTTGTTCAAGCACGACACTTGCATCCTAA 1848 42.26 IGGMRQLKLIYLTILLILSTFREARSHGDQPLSRIAIQKTTLAFHEQAYVKASPAILGFKGQTTEWVSLEYSSPKPSIDDWIGVFSPANFSSSTCTAENPRAYPPFVCSAPIKFQYANYSSPDYKNTGKGYLKLQLINQRSDFSFALFSGGLSNPKLVAVSNHVAFMNPNAPLYPRLAQGKTWNEMTVTWTSGYDIDEAEPFVEWNLKGETFTRSPAGTLTFDQFSMCGAPAKTVGWRDPGYIHTGFLKDLWPNRLYTYKLGHRLYNGTYIWSSTYQFKASPYPGQKSLQRVIIFGDMGKDEADGSNEYNDFQQGSLNTTRQLIRDLKNYDIVFHIGDLSYASGYLSQWDQFLAQIEPIASTVPYMVASGNHERDWPNSGSFYNTMDSGGECGVVAESMFYVPAENRAKFWYSTDYGMFRFCVADTEHDWREGTEQYKFIEHCLASVDRRKQPWLIFMAHRVLGYSSGIFYAQEGSFAEPMGRESLQNLWQKYRVDLAFYGHVHNYERTCPIYQNICTNEEKHHYKGALNGTIHVVAGGGGAGLAEFTTLETKWSISKDYDFGYVKLTAFDHSNLLFEYQKSSDGKVYDSFKISRDYRDILACTVDSCSSTTLAS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1215028 1220901 + Bma000287.1 Bma01g00122 74639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00122 615 Pfam Calcineurin-like phosphoesterase 291 506 IPR004843 GO:0016787
Bma01g00122 615 SUPERFAMILY Purple acid phosphatase, N-terminal domain 149 282 IPR008963 GO:0003993|GO:0046872
Bma01g00122 615 Gene3D - 171 284 - -
Bma01g00122 615 Pfam Iron/zinc purple acid phosphatase-like protein C 531 590 IPR025733 -
Bma01g00122 615 Pfam Purple acid Phosphatase, N-terminal domain 176 279 IPR015914 GO:0003993|GO:0046872
Bma01g00122 615 SUPERFAMILY Metallo-dependent phosphatases 291 606 IPR029052 -
Bma01g00122 615 PANTHER PURPLE ACID PHOSPHATASE 4 614 - -
Bma01g00122 615 CDD MPP_PAPs 290 595 IPR041792 -
Bma01g00122 615 Pfam Fn3-like domain from Purple Acid Phosphatase 50 168 IPR040974 -
Bma01g00122 615 Gene3D - 286 599 IPR029052 -
Bma01g00122 615 PANTHER PURPLE ACID PHOSPHATASE-RELATED 4 614 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00122 K22390 ACP7; acid phosphatase type 7 - pvy:116132270 1074.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00122 Bma-Chr1:1215028 Bma14g00341 Bma-Chr14:4234962 4.79E-27 dispersed
Bma03g01255 Bma-Chr3:21072425 Bma01g00122 Bma-Chr1:1215028 0 transposed
Bma08g01194 Bma-Chr8:50842975 Bma01g00122 Bma-Chr1:1215028 2.06E-80 transposed
Bma01g00122 Bma-Chr1:1215028 Bma06g00730 Bma-Chr6:38288763 3.49E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g38 Blo01g00453 . Bda01g02128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0528 Cone9ag0540 . . . . . . . . . Bpe02g02315 Bma01g00122 . . . . . . . . . Cpe07g00088 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007198 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 4 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00122 Bma_Chr01 FPKM 2.260402 2.635265 0.0 0.0 0.275126 0.0 0.363155 0.0 0.0 0.0