Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00123 ATGAAATGTCATCTTCTTCTCTTGGGAGCTCTTATTTTCTTGAGTTCCCTCTTTCTGGGTTGCGATTTTGGTTTTGTTTCAGCTGAAGTGGTTTCTGAGAAATCTGTTTTACTGGAGTTTAAGCAGTCTGTTTCCGATCCATCTGGAATCCTCTCAAGCTGGGATGGTAAAGACTCTGATTACTGTTCTTGGTACGGTATTTCATGCGACTCCAATTTCAAGGTTTCCTCGCTGAATATTAGTGGGATTACTGGCTTCGGAGGTAGTTATCAAACTTCTTCTAGTCCTTATTTTTCTCGGATTGAGTATCATAGATTTGGAAATGGAAGAATTTGTTCGCGTGGTGGAGCAAAATTAGTTGGTGGATTGCCGTCGATAATTGGAAAACTTACTGAACTTAGGGTTGTATCACTTCCTTGTAATGAGCTTAGAGGTGAAATCCCTTCAGAAATTTTTGGTTTAGAAAAACTAATAGTGCTTGATCTTGAGGGAAATTCGCTCACAGGAAGATTGCCGGATCGATTCGATGGTTTAAGAACGTTGCGGGTTTGGAATCTTGCGCTAAATTGGATTTATGGGGAAATTCCTTTTTCAATTTCGAAATGTGTGGATCTGGAAGTTCTAAATTTAGCTGCTAATAGACTCAACGGGTCAGTGCCTTCATTTTTGGGCAATTTTCCAAAGTTAAAGAGGCTTTATTTGTCACAAAATAGGTTAAGCGGATACTTTCCAGCAGGGTTTTCGATGAGTTGTTCGAGTCTCGAGTACCTTGATTTGTCAGGAAATTTTCTTGCTGGTAGTATACCAAGTTGGCTGGGCAAGTGTAAGCAATTAAAGGAACTTTTGTTGTTTTCGAATAAGTTGAAAGGTGCTATTCCTAATGAGCTAGGACAGCTCCAGATGCTCGAAGTTCTAGACGTTTCTCGAAACAGTCTCAGCGGCTTAATCCCGGTGGATCTGAGGCAATGCTTAAAATTATCGGTTCTTGTGATCTCCAATCTTTTTAATCCATACACTCATCATAATTCCGTCGAGCACAATTATTTTGAAGGCTCTATTCCTGAAGCAGTTGCTAGTCTTCCAAAGTTAAGGATAGTTTGGGCTCCGAGGGCGAATCTCGAAGGGGAGCTTCCAAGCGAATGGGGTGATTGTGAGAATATGGAAATGCTTAACTTAGCTCAGAATCGTTTAAGAGGGGAAATATTCAACGTATTTCGGCAGTGTAAGAAGTTAGATTATCTTGATTTAAGTTCGAATAAGATTTCTGGCAAGCTGGTTGAAGAACTTCATCAGGAAAGGCTCGTAAATGTTAGCTTTGATAAATTCACCAGTCATATTCCAATGGCGTTGCATACAATTTGCAGATCTCTCCGATTCTTGAATGTCTCTAATAATCAAATTTCCGGGTGCATTCCTCCGAGTCTAGGCAGTTGGAAATCACTTGTTGTTCTTGACTGGAGTCGAAACATGATTGAAGGTCACATTCCTCCCGAGGTTGGTCTTCTGAAGCATCTAAAATATCTCTCCCTAGCAGGAAATAATCTGGCGGGCGAGATCCCCTCAAGTTTCACATGGCTGAGCTCCCTCCAAGTGTTAGACCTCTCTTCAAATGAAATCTATGGGGAGATCCCCCAAGGTCTGGTGCACTTGACAAAATTAAGGGCTCTATTGCTCAACAACAACAAACTTTCAGGGAAGATTCCTTCGGGATTGTTTCGGCCGACACTATCTTCGTTTAACATATCATTCACTAACCTTTCTGGTTCTTCTCTGTCGAAAAATGACTCAATTGACCTCACTTGTGTTCTTGGCAAACATTGCTTCCTTTATCCCCATTTTGTTTTCCTGGCCGCATCATCTGAAGACGTGCTGAATGTCAGCGGAAACTCGGGAACTAATCAATCGGCTGTGTCGGAGAGTGTCAGTGCCACTCCAAATAATGGTCTGAATTCTATTGAAATTGCAGCTATAGTATCTGCATCAGTAGTTGTTTCAGTTTTCTTAGCTCTGCTTATCCTCTTCTTTTATACAAGAAAACGGGTCCCACATTCAAAGGTTCAGGTATCTGAATCGAGAGAAATAACAGTTTTCATCGACATTGGAGCTCCATTGACATTTGAGGCAATCGTCAAAGCAACTGGAAATTTCAGTAATGCCAACTGTATTGGAAATGGAGGATTTGGAGCAACCTATAGAGCTGAAATTCATCCAGGAACCTCGATTGCGGTCAAAAAACTTTCTGTCGGACGATGCCACGGCATTCAACAATTTGATGCAGAGATTAAGATTCTCGAAAAGTTGCGACACCCTAATCTTGTTACCTTGATAGGCTACCATGCCGGTGATTCTGAGATGTTACTCATCTATAATTACTTGCCGGGTGGTAATCTGGAGAAGTTCATAAAAGATCGATCAGCTAAAGCCGTCGATTGGAAGATTCTTCATAAGATCGCTTTCGACATAGCCAAGGCACTCGCTTATCTACACGACCAGTGCGCTCCGAGGGTCCTTCACCGTGATGTCAAACCGAGCAACATATTGCTCGATAATGAATTAAATGCGTATTTATCTGATTTTGGTTTATCGAGACTCTTGGGAACTTCTGAATCGCATGCAACGACTGGTGTGGCTGGAACGTTCGGTTATGTGGCCCCGGAGTATGCTTTGACCTGTCGGCTATCCGAGAAAGCTGATGTTTACAGCTATGGTGTGGTTTTGCTTGAATTAATATCTGATAAAAGAGCATTGGATCCTTCCTTTTCGTCGCATGTAAATGGTTTCAATATCGTTTCGTGGGCCCGCATGCAGTTAGGACTAGGACGGGCAAAAGAAGTGTTCACTGTCGGGCTATGGGATTCAACTCCGCACAATGATTTGGTCTTGATGCTTCACTTAGCCATCACTTGTACGGATGAAACACTCTCGACTAGGCCCACGATGAAGCAAGTTCTCCGGAGATTGAAGCAAATTCAACCTCTTGCTCAGTAG 2988 42.2 MKCHLLLLGALIFLSSLFLGCDFGFVSAEVVSEKSVLLEFKQSVSDPSGILSSWDGKDSDYCSWYGISCDSNFKVSSLNISGITGFGGSYQTSSSPYFSRIEYHRFGNGRICSRGGAKLVGGLPSIIGKLTELRVVSLPCNELRGEIPSEIFGLEKLIVLDLEGNSLTGRLPDRFDGLRTLRVWNLALNWIYGEIPFSISKCVDLEVLNLAANRLNGSVPSFLGNFPKLKRLYLSQNRLSGYFPAGFSMSCSSLEYLDLSGNFLAGSIPSWLGKCKQLKELLLFSNKLKGAIPNELGQLQMLEVLDVSRNSLSGLIPVDLRQCLKLSVLVISNLFNPYTHHNSVEHNYFEGSIPEAVASLPKLRIVWAPRANLEGELPSEWGDCENMEMLNLAQNRLRGEIFNVFRQCKKLDYLDLSSNKISGKLVEELHQERLVNVSFDKFTSHIPMALHTICRSLRFLNVSNNQISGCIPPSLGSWKSLVVLDWSRNMIEGHIPPEVGLLKHLKYLSLAGNNLAGEIPSSFTWLSSLQVLDLSSNEIYGEIPQGLVHLTKLRALLLNNNKLSGKIPSGLFRPTLSSFNISFTNLSGSSLSKNDSIDLTCVLGKHCFLYPHFVFLAASSEDVLNVSGNSGTNQSAVSESVSATPNNGLNSIEIAAIVSASVVVSVFLALLILFFYTRKRVPHSKVQVSESREITVFIDIGAPLTFEAIVKATGNFSNANCIGNGGFGATYRAEIHPGTSIAVKKLSVGRCHGIQQFDAEIKILEKLRHPNLVTLIGYHAGDSEMLLIYNYLPGGNLEKFIKDRSAKAVDWKILHKIAFDIAKALAYLHDQCAPRVLHRDVKPSNILLDNELNAYLSDFGLSRLLGTSESHATTGVAGTFGYVAPEYALTCRLSEKADVYSYGVVLLELISDKRALDPSFSSHVNGFNIVSWARMQLGLGRAKEVFTVGLWDSTPHNDLVLMLHLAITCTDETLSTRPTMKQVLRRLKQIQPLAQ 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1222294 1225281 + Bma000288.1 Bma01g00123 74640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00123 995 SMART LRR_typ_2 454 478 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 502 525 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 526 549 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 226 249 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 251 275 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 154 177 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 299 322 IPR003591 -
Bma01g00123 995 SMART LRR_typ_2 550 574 IPR003591 -
Bma01g00123 995 SUPERFAMILY Protein kinase-like (PK-like) 694 988 IPR011009 -
Bma01g00123 995 SMART serkin_6 716 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00123 995 Gene3D Ribonuclease Inhibitor 30 217 IPR032675 -
Bma01g00123 995 Gene3D Transferase(Phosphotransferase) domain 1 792 993 - -
Bma01g00123 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 432 992 - -
Bma01g00123 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Bma01g00123 995 Gene3D Ribonuclease Inhibitor 431 494 IPR032675 -
Bma01g00123 995 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Bma01g00123 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 425 - -
Bma01g00123 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 11 425 - -
Bma01g00123 995 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Bma01g00123 995 Pfam Leucine rich repeat 205 262 IPR001611 GO:0005515
Bma01g00123 995 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Bma01g00123 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 432 992 - -
Bma01g00123 995 ProSiteProfiles Protein kinase domain profile. 716 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00123 995 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515
Bma01g00123 995 Gene3D Phosphorylase Kinase; domain 1 678 791 - -
Bma01g00123 995 Gene3D Ribonuclease Inhibitor 218 319 IPR032675 -
Bma01g00123 995 Gene3D Ribonuclease Inhibitor 320 430 IPR032675 -
Bma01g00123 995 Gene3D Ribonuclease Inhibitor 495 607 IPR032675 -
Bma01g00123 995 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Bma01g00123 995 Pfam Protein kinase domain 719 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00123 995 SMART LRR_sd22_2 408 431 - -
Bma01g00123 995 SMART LRR_sd22_2 299 320 - -
Bma01g00123 995 SMART LRR_sd22_2 526 549 - -
Bma01g00123 995 SMART LRR_sd22_2 226 259 - -
Bma01g00123 995 CDD STKc_IRAK 722 990 - -
Bma01g00123 995 SUPERFAMILY L domain-like 251 576 - -
Bma01g00123 995 PRINTS Leucine-rich repeat signature 526 539 - -
Bma01g00123 995 PRINTS Leucine-rich repeat signature 302 315 - -
Bma01g00123 995 SUPERFAMILY L domain-like 30 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00123 Bma-Chr1:1222294 Bma13g00182 Bma-Chr13:2092406 0 dispersed
Bma01g00123 Bma-Chr1:1222294 Bma04g01039 Bma-Chr4:18724369 4.43E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66239 PF00069 Pkinase 1.10E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00123 - - ccav:112528417 848.195