Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00124 ATGGGAAACGGATTGACATGTTTTGCAGCTGGACGGACAATTCCGACGAAGAAATCCTCCAAGCGATCAACCTCGCGTTTCGACTTCTCCACCGGGGAAACTGTTTCAGCCTCTTCCTCCGCCACGAAAACAAATAAAAACGGCGATGATTCTTTGAAAATAAACGAGGAGGCTCTCGTTGCAGCTATACTTCTGGCGGAGCAGCACCGGCGAAGTTCTCTCCAATTCAATCGTTCTGCTTCCGTCGCTCATCCACCGCAAACGGCGAAGAAGCAGAGGTTTCCGAGGAGTTCGAGTGCAAGGCAACAACCAAACTCCGACCCTGTAATTCCCACTCATCGCTTTCCTCTTCAGGATAGGAAGATGGATGGTTTAGAAACAAGACATTTTGTTCTCGTCCATGGCGGAGGTTATGGAGCTTGGTGTTGGTATAAAACGATGACGCTTTTGGAAGAAAGTGGATACAAAGTTGATGCAATTGACCTAGCAGGCTCTGGAGTTCATCCTTCTAACTCCAGTTCCATCACTTCTCTTGCACACTATGCAGACCCTCTCACTCGTCTTCTCCGGCAATTAAACGACGAAGATAAGGTAATTTTGGTGGGTCATGATGTTGGGGGAGTTTGTATTTCATATGCAATGGAGATGTTTCCAAGTAAAATCTCAAAAGCCATATTCATTGCAGCTACAATGTTGACAAATGGGCAGTCTGCTCTCCACTTATTATCCAAACAGGCAGAAATGAATGATCTGATGCAAAATGCTCAGGTATTTGAGCATGCAAATGGGAATGATCAACCTCCGACGGCCATAAACCTCGACAAAGCACTCCTAAAAGACTTGCTATTCGGTCGAAGTCCGGCCAAGGACGTTGCTTTAGCAACATTATCGATGAGGCCAATCCCTTTTCCGCCAATGATGGAGAAGCTGAGAGTTTCAGAAAAAAGGTATGGGAGTGTGAAGAGATTCTACGTAGGAACTGAAGACGACTGTGCAATTTCTTCTTCCACGCAGGAAGCCATGATCAACTCAAACCCTCCCCACAAGGTCTTCTGGCTCAAAAACTCAGACCATTCTCCCTTCTTCTCTAGGCCTCAAGCCCTCCATAAAATATTACTTGAAATATCACTCATTTAA 1137 45.73 MGNGLTCFAAGRTIPTKKSSKRSTSRFDFSTGETVSASSSATKTNKNGDDSLKINEEALVAAILLAEQHRRSSLQFNRSASVAHPPQTAKKQRFPRSSSARQQPNSDPVIPTHRFPLQDRKMDGLETRHFVLVHGGGYGAWCWYKTMTLLEESGYKVDAIDLAGSGVHPSNSSSITSLAHYADPLTRLLRQLNDEDKVILVGHDVGGVCISYAMEMFPSKISKAIFIAATMLTNGQSALHLLSKQAEMNDLMQNAQVFEHANGNDQPPTAINLDKALLKDLLFGRSPAKDVALATLSMRPIPFPPMMEKLRVSEKRYGSVKRFYVGTEDDCAISSSTQEAMINSNPPHKVFWLKNSDHSPFFSRPQALHKILLEISLI 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1232262 1233928 + Bma000289.1 Bma01g00124 74641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00124 378 Pfam Alpha/beta hydrolase family 130 368 IPR000073 -
Bma01g00124 378 MobiDBLite consensus disorder prediction 16 48 - -
Bma01g00124 378 PANTHER METHYLESTERASE 15, CHLOROPLASTIC-RELATED 42 377 - -
Bma01g00124 378 PANTHER METHYLESTERASE FAMILY MEMBER 42 377 IPR045889 -
Bma01g00124 378 MobiDBLite consensus disorder prediction 76 109 - -
Bma01g00124 378 MobiDBLite consensus disorder prediction 15 51 - -
Bma01g00124 378 MobiDBLite consensus disorder prediction 76 116 - -
Bma01g00124 378 Gene3D alpha/beta hydrolase 124 376 IPR029058 -
Bma01g00124 378 SUPERFAMILY alpha/beta-Hydrolases 128 374 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00124 - - - jre:109015150 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00124 Bma-Chr1:1232262 Bma14g01365 Bma-Chr14:25425656 1.60E-140 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g29 . . Bda01g02125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00124 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002680 1 2 2 2 0 2 3 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00124 Bma_Chr01 FPKM 22.450891 25.831039 103.597168 105.137848 59.393188 57.505161 59.016479 62.765308 59.637531 63.925488