Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00127 ATGGATCAACGCCGGATCCGCTCGCCCAAATCGGAGCTGTACTCGACCGTTGTTATCCATTCTGATTCCGACTCCGATCATAATCAAAACGAACGGAAATCCGGCAAGGCAGCCGGGAAAAAGACACAGAAACAAGACCTATACGCTACTATGATTTACAAGAATGACGGGGATGAAGACGAAGATGATTCTTCTCTCCCTCCCCTCCTCAAACGTCTCCCCAAGGACTTTGGTGGTGGATCTTCAATTGACTACGAAGAAGGTGGCGGTTACGAGTCTGATAGTTACGCGGGTGATTTCGGGACTATGATTGTGAAGACAGAACGGAATCGACCACAGAGAGGTGGTGTTGCTGATGGAGGCAGGAGCGGCAGCGATGACGAGGACGGCGACGACGGTGATAAGTTTTCGACCTTTGTGGTAAGGTCTACAATGAGGTCGAGCGTGAGAGAATCTGTGAGCGGTACTGTTTTGAGGACAGGTGACTCTGCAAGAGGAGAACTTGAAGGGTCAAATATGGGGATCGCTGTGGCGAGCATGCAGGAGCTCGGAGATGTGGGCTTTGGTAAGCAGAGGAAAAGGAGCGGCTCCTACTCGTCGCTGGGTGAAGAGGGCGGACGCCAACACTCGAAAGTATCTTCAAGTTCGATTCCTGACAGCGTTACCAGGGAAGATCCTTCAACTAAGTATGAATTACTCAATGAGCTCGGAAAAGGATCTTATGGGGCTGTTTACAAGGCCAGAGATATTAAAACTTCTGAACTTGTTGCTATCAAAGTCATATCGTTATGTGAAGGAGAGGAAGGATATGAGGAAATTCGTGGTGAGATTGAGATGTTGCAGCAATGTAGTCATCCAAATGTTGTCCGTTACCTTGGAAGTTACCAAGGAGAAGAATACCTTTGGATAGTGATGGAGTATTGTGGTGGAGGAAGTGTTGCTGATTTGATGAATGTTACCGAGGAACCTTTAGAGGAGTACCAAATAGCATATATTTGTCGGGAAGCATTGAAGGGTCTTTCTTATCTACACTCCATATTCAAGGTTCATAGAGATATTAAAGGTGGTAATATATTGCTAACGGAACAAGGAGATGTCAAGTTGGGCGATTTTGGAGTTGCAGCACAACTAACTCGGACCATGTCAAAGCGTAACACATTTATTGGCACTCCTCATTGGATGGCTCCAGAAGTTATTCAAGAGAGTCGTTATGATGGAAAGGTGGATGTATGGGCTCTTGGTGTTTCAGCTATCGAAATGGCTGAGGGACTTCCTCCAAGATCTGCAGTGCATCCAATGAGGGTTCTGTTCATGATATCAATTGAGCCAGCTCCAATGCTCGAGGACAAAGAAAAATGGTCTCTGGTGTTCCATGACTTTATTGCAAAAAGCCTAACAAAGGAACCACGTTTACGTCCCACTGCAAGTGAGATGTTGAAGCACAAATTTATTGAGAAATGCAAGAGTGGGGCGTTGGCAATGCTGACTAAGATTGAAAAGGCTAGGCAAATTAGAGCTGCAATGGCACTGCAAGTGCAGAATTTTGTTCCAGCCGCTCCTGGAGATAGTACATTATTGCCTTCAAAGGTGAATGAGGATTATGGCGATACTGTTCCTTCCAGACCCCAGAATATTGGTATTCAAGGGGAAAATAAAGTACCTACAGTCAGCTCTTTGTCGAAGCAGCAGATATCAGAAGGCACGGACCAAGCCTCTGAAGGTAACTTTGCAACTATTATAATTCATGGTGGAGATGACTTAGATAACGCACCTTTTGAGACAATGGTTAACAATGCTGAAACTTCAACTGCGTGTGAAAATGATGAAAGCTCTTCTATCAGTGGCAATGGAGGCTTGATTAACTACAGTATTAACCAATTGTTTGGTATGCATTTCAGGCAGGATTTCACTAGTGCCAAGGCAAATAATGTCTCAAATGTAGAGTCTGATCCCCTTATGGCTGGCACACTGAACCAAAATAATAGCACAAAAGATCATTCTCAAGCACAGATCGGCAGTCATGTTGGTCTCAACAGTAACACACTGAAGAATGAAACTGCAAGCCGAAAGGCCTTTGCATTGCAAGATAAACTCTGGTCTATATATGCAGCTGGTAATACTGTACCTATTCCATTCTTGCGGGCAACTGATATATCTCCAATAGCTCTCTTATCTGACAATGTTTTTGGAAACACGGATCGGGATGGCGCAGGAGCTTCAGCCATGGAAGCAATACATGAGCTTTTTACTGGAGATGGACAGTCCAAAAAGGGTCGTAGGGGACAAAACGAGATGCCCCTTCCTCCTAGTGTCTACCAAAGATTAACTTCAAGTTCAACCTTGTTAAATCTCGCACAGGCCTTAGCTTATCACAAAACTCTGAAAGCGAGAGCTATGAAAAGAAGCAGAACAGTCTCCGTTACATGTCTTCTCAGGTTCCTCGCTTCCGCTCAATCTTCGTCTCTTTCGGAACTTCCTATCATTACCCTTCCAGCTAAACAATGTGCCCTCCAAAACTCTCTCTCTTCGCCATTCTCTCTCCCCTCTTCCAAACCCAATTCCATATTTTTCTCATCTGCTACCGTTCGCTTTTTAACTACCAAAGTCCACACAGACGTCGAGAACAGTGAAAAGGAAGAAGACCCTTTTCACTATTGGACTGATGAAGAAAAAGAAACATCTGATGGTTGGGAAGAAGAAGAAGACGTAGAGCCCGAGATTGGGGACGGAGGCGATGGTGGCGGAGTTGTGTTGCAAGGCGTTCCATGGGGGGAGCAGGCTCTTTCTCTAGCCCATGATGTCCTGCTGCGATTTGCTGATGACATAAAACTATTCTCTTTTAAGACTACTCCTCGCGGATACATCTACGTGAGGCTTGATAAATTATACGGGTGTCCTACAATCGAAGAGCTCGAAAGCTTCAACAGAGAATTGAAGAAAAGATTAGACGAAGCTGGAGAACTAGGAGAAATTCCAGATGATCTGGCTCTCGAGGTGTCGACCCCTGGTGCGGAGAGGCTCCTTAAGATACCAGACGAACTGGATCGATTTAAAGACATGCCAATGTGTGTACGATACAACGAAGGTGAGCTGTCGAAATGGGCAGAAAAAGATGGAATCTTCATGCTGGAATCTGTGGAAACAAGTTCAGAAATATGTGTGTGGAAGTTGGCAAACATAAAGGAAAATAGAGATCCTTTAAGTAAGGGTAGGCCGTTGAGCAGAAAACAGAGAGATTGGAGATTGAATCTTCCATTTGATATGCATAAAAAGGTGACTTTGTACCTTGAATGTTGA 3297 44.8 MDQRRIRSPKSELYSTVVIHSDSDSDHNQNERKSGKAAGKKTQKQDLYATMIYKNDGDEDEDDSSLPPLLKRLPKDFGGGSSIDYEEGGGYESDSYAGDFGTMIVKTERNRPQRGGVADGGRSGSDDEDGDDGDKFSTFVVRSTMRSSVRESVSGTVLRTGDSARGELEGSNMGIAVASMQELGDVGFGKQRKRSGSYSSLGEEGGRQHSKVSSSSIPDSVTREDPSTKYELLNELGKGSYGAVYKARDIKTSELVAIKVISLCEGEEGYEEIRGEIEMLQQCSHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTEEPLEEYQIAYICREALKGLSYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGLPPRSAVHPMRVLFMISIEPAPMLEDKEKWSLVFHDFIAKSLTKEPRLRPTASEMLKHKFIEKCKSGALAMLTKIEKARQIRAAMALQVQNFVPAAPGDSTLLPSKVNEDYGDTVPSRPQNIGIQGENKVPTVSSLSKQQISEGTDQASEGNFATIIIHGGDDLDNAPFETMVNNAETSTACENDESSSISGNGGLINYSINQLFGMHFRQDFTSAKANNVSNVESDPLMAGTLNQNNSTKDHSQAQIGSHVGLNSNTLKNETASRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVFGNTDRDGAGASAMEAIHELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSSTLLNLAQALAYHKTLKARAMKRSRTVSVTCLLRFLASAQSSSLSELPIITLPAKQCALQNSLSSPFSLPSSKPNSIFFSSATVRFLTTKVHTDVENSEKEEDPFHYWTDEEKETSDGWEEEEDVEPEIGDGGDGGGVVLQGVPWGEQALSLAHDVLLRFADDIKLFSFKTTPRGYIYVRLDKLYGCPTIEELESFNRELKKRLDEAGELGEIPDDLALEVSTPGAERLLKIPDELDRFKDMPMCVRYNEGELSKWAEKDGIFMLESVETSSEICVWKLANIKENRDPLSKGRPLSRKQRDWRLNLPFDMHKKVTLYLEC 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1244103 1256984 + Bma000292.2 Bma01g00127 74644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00127 1098 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 172 800 - -
Bma01g00127 1098 MobiDBLite consensus disorder prediction 188 228 - -
Bma01g00127 1098 MobiDBLite consensus disorder prediction 1 92 - -
Bma01g00127 1098 Gene3D Transferase(Phosphotransferase) domain 1 226 515 - -
Bma01g00127 1098 Pfam Protein kinase domain 230 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00127 1098 MobiDBLite consensus disorder prediction 24 40 - -
Bma01g00127 1098 SUPERFAMILY Protein kinase-like (PK-like) 229 485 IPR011009 -
Bma01g00127 1098 ProSiteProfiles Protein kinase domain profile. 230 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00127 1098 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 172 800 - -
Bma01g00127 1098 ProSitePatterns Protein kinases ATP-binding region signature. 236 259 IPR017441 GO:0005524
Bma01g00127 1098 MobiDBLite consensus disorder prediction 106 136 - -
Bma01g00127 1098 MobiDBLite consensus disorder prediction 193 223 - -
Bma01g00127 1098 Coils Coil 968 988 - -
Bma01g00127 1098 Hamap Ribosome maturation factor RimP [rimP]. 925 1098 IPR003728 GO:0042274
Bma01g00127 1098 CDD STKc_MAP4K3_like 229 484 - -
Bma01g00127 1098 MobiDBLite consensus disorder prediction 892 908 - -
Bma01g00127 1098 MobiDBLite consensus disorder prediction 888 912 - -
Bma01g00127 1098 SMART serkin_6 230 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00127 - - - mnt:21409099 1005.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00127 Bma-Chr1:1244103 Bma14g00255 Bma-Chr14:3020751 2.25E-73 dispersed
Bma02g00281 Bma-Chr2:3242822 Bma01g00127 Bma-Chr1:1244103 1.17E-40 dispersed
Bma08g01215 Bma-Chr8:51190674 Bma01g00127 Bma-Chr1:1244103 7.06E-09 dispersed
Bma01g00127 Bma-Chr1:1244103 Bma12g00255 Bma-Chr12:3305310 2.97E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g25 Blo01g00457 . . . . . . . . Cmo18g01122 . Cma18g01102 . Car18g01016 . Cpe09g00224 . . . . . . . . . . . . . . . Cone13ag0901 Cone19ag0899 . . . . . . . . . . . . Bma01g00127 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT1G53165 64.2 2.8e-190 662.1
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bma14g00255 . 1 577 MAP Kinase Kinase Kinase Kinase AT3G15220 67.3 3.1e-205 711.8
Bma01g00127 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.7e-67 252.3
Bma01g00127 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 55.8 2.2e-218 755.7
Bma01g00975 . 1 662 MAP Kinase Kinase Kinase Kinase AT5G14720 64.0 4.2e-239 824.3
Bma12g00255 . 5 693 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 4.4e-242 834.3
Bma05g00683 . 5 662 MAP Kinase Kinase Kinase Kinase AT4G24100 66.2 1.4e-237 819.3
Bma05g00683 . 6 662 MAP Kinase Kinase Kinase Kinase AT4G10730 67.2 1.5e-239 825.9
Bma12g00255 . 6 694 MAP Kinase Kinase Kinase Kinase AT4G10730 65.4 1.1e-237 819.7
Bma10g00841 . 4 402 MAP Kinase Kinase Kinase Kinase AT1G70430 56.9 9.2e-129 457.6
Bma12g00255 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.0 1.8e-121 433.3
Bma05g00683 . 2 350 MAP Kinase Kinase Kinase Kinase AT1G70430 60.2 4.6e-120 428.7
Bma10g00841 . 1 678 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 3.1e-210 728.4
Bma01g00975 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.1 5.5e-100 361.7
Bma10g00841 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.1 3.8e-85 312.4
Bma05g00683 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 9.2e-79 291.2
Bma12g00255 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 5.0e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003387 1 1 1 1 1 2 1 2 3 0 3 2 1 1 1 1 3 2 1 3 1 3 1 1 1 2 1 1 4 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66240 PF00069 Pkinase 2.90E-66 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00127 Bma_Chr01 FPKM 4.399073 3.871761 1.735718 1.56798 2.176081 1.471361 0.0 2.118665 0.0 2.019444