Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00129 ATGGCGGAAGCTTCAGTCAAACCGACGCCTCTTCTGAAAGATGAGCTTGATATCGTCATCCCCACGATTAGAAACCTGGATTTCTTAGAGATGTGGAGGCCGTTTTTCCAGCCGTACCATCTGATAATCGTTCAGGACGGCGACCCTTCGAAAATTATCAAGGTTCCAGATGGCTTCGACTACGACCTCTACAATCGAAACGACATCAATCGGATTTTGGGTCCCAAGGCGTCTTGCATTTCCTTCAAAGACTCTGCTTGTCGCTGCTTCGGCTACATGGTTTCTAAGAAGAAGTATATTTACACCATTGACGATGATTGCTTCGTCGCCAAAGATCCAACTGGGAAGGATATCAATCCGTTTTTTTTCAACACTCTTTACGATCCGTATCGAGATGGTGCAGACTTTGTTCGTGGATATCCATTCAGTCTTCGTGAGGGTACTCCAACTGCTGTTTCTCACGGACTTTGGCTTAATATCCCCGATTATGACGCCCCAACTCAACTCGTTAAACCTCGTGAGAGGAACACGAGGTTTGTTGATGCAGTCTTAACAATTCCCAAGGGAACTTTATTCCCCATGTGTGGAATGAATCTGGCTTTCGATCGAGAGCTTATCGGACCGGCTATGTACTTTGGACTCATGGGCGATGGTCAGCCGATTGGGCGATACGACGATATGTGGGCTGGCTGGTGTGTGAAGGTTATTTGTGACCATCTCGGGTTGGGGGTGAAGACGGGTTTGCCATATATTTGGCACAGCAAAGCAAGCAATCCATTTGTGAACCTTAAGAAGGAATACAAGGGAATCTTCTGGCAAGAAGAAATCATTCCATTTTTTCAAACTGCAAGTCTTTCAAAAGATTGCACTACAGTTCAAAAATGCTATATTGAACTGTCAAAGCAAGTGAGGGAGAAGCTTGCGAAGGTTGATCCTTACTTCGTCAAGCTAGCAGACGCCATGGTTACTTGGATTGAAGCTTGGGATGAGCTCAACAACTAA 1002 45.51 MAEASVKPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPDGFDYDLYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGKDINPFFFNTLYDPYRDGADFVRGYPFSLREGTPTAVSHGLWLNIPDYDAPTQLVKPRERNTRFVDAVLTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQTASLSKDCTTVQKCYIELSKQVREKLAKVDPYFVKLADAMVTWIEAWDELNN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1260216 1262805 + Bma000294.2 Bma01g00129 74646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00129 333 SUPERFAMILY Nucleotide-diphospho-sugar transferases 37 232 IPR029044 -
Bma01g00129 333 PIRSF UPTG 6 333 IPR004901 GO:0016866|GO:0071669
Bma01g00129 333 Pfam Reversibly glycosylated polypeptide 12 332 IPR037595 -
Bma01g00129 333 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 3 332 - -
Bma01g00129 333 PANTHER UDP-ARABINOSE MUTASE 3 332 IPR037595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00129 K13379 RGP, UTM; reversibly glycosylated polypeptide / UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.30] - qsu:112009791 659.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00129 Bma-Chr1:1260216 Bma06g00745 Bma-Chr6:38627713 0 dispersed
Bma01g00129 Bma-Chr1:1260216 Bma02g00451 Bma-Chr2:6931912 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g14 Blo01g00460 . . Bda11g01166 Bpe13g01365 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01166 . Bpe02g02309 Bma01g00129 . . . . . . . . . Cpe07g00091 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000316 4 5 5 5 5 4 7 4 4 4 3 4 7 4 4 6 4 7 7 4 4 4 4 4 4 4 4 7 4 4 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00129 Bma_Chr01 FPKM 18.820465 17.723701 69.18383 62.857792 1.144423 0.785586 0.801318 4.279087 4.811862 4.164505