Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00131 ATGGGGAGGGGTAGGGTTCAGCTGAAACGAATAGAAAATAAAATCAATCGGCAAGTTACTTTTTCAAAAAGGAAAGGTGGTTTACTGAAGAAAGCTCATGAAATTTCTGTACTTTGTGATGCTGAGGTTGCTTTGATCGTCTTCTCCAACAAAGGAAAGCTCTTTGAATACGCTACAGATTCTAGTATGGAGATGATACTTGAGCGTTATGAGAGATATTCCTGTGCAGAAAGGCAGCTTACTGCAACTCAATCTGAGTCACAGGGTAACTGGATCGTTGAGTATTCAAGGCTAAAAGCTAAGATTGAGCTCTTAGAGAGAAAATACAGCCACTATCTGGGAGAAGATTTGAATTCATTGAGTCTCAAAGAACTTCAAAGTCTGGAGCAACAGCTTGAAACTGCTCTTAAACATATTCGCACTAGAAAAGTATGGTTTATATGA 444 38.96 MGRGRVQLKRIENKINRQVTFSKRKGGLLKKAHEISVLCDAEVALIVFSNKGKLFEYATDSSMEMILERYERYSCAERQLTATQSESQGNWIVEYSRLKAKIELLERKYSHYLGEDLNSLSLKELQSLEQQLETALKHIRTRKVWFI 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1275757 1278266 + Bma000296.1 Bma01g00131 74648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00131 147 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bma01g00131 147 Coils Coil 122 142 - -
Bma01g00131 147 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma01g00131 147 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma01g00131 147 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bma01g00131 147 Coils Coil 95 115 - -
Bma01g00131 147 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma01g00131 147 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bma01g00131 147 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 143 - -
Bma01g00131 147 ProSiteProfiles K-box domain profile. 88 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g00131 147 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 143 - -
Bma01g00131 147 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma01g00131 147 Pfam K-box region 83 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma01g00131 147 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma01g00131 147 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma01g00131 147 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00131 Bma14g01715 CCT
Bma01g00131 Bma14g01715 ECH
Bma01g00131 Bma06g00742 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00131 Bma-Chr1:1275757 Bma03g00861 Bma-Chr3:8310992 2.96E-58 dispersed
Bma02g00316 Bma-Chr2:3822326 Bma01g00131 Bma-Chr1:1275757 1.17E-26 dispersed
Bma14g01715 Bma-Chr14:36348830 Bma01g00131 Bma-Chr1:1275757 1.69E-30 dispersed
Bma01g00131 Bma-Chr1:1275757 Bma14g01676 Bma-Chr14:35661221 1.18E-75 wgd
Bma01g00131 Bma-Chr1:1275757 Bma03g00860 Bma-Chr3:8304227 3.23E-50 wgd
Bma01g00131 Bma-Chr1:1275757 Bma06g00742 Bma-Chr6:38543749 1.61E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56605 PF01486 K-box 1.60E-19 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00131 K09264 - qsu:112022353 226.483