Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00132 ATGGCGAAGACATCCAACCATCGGAGCTCGCAGGGTAAAACTGAGAACAATAAGAAGAAGAAGCAGAAGAAGAAGAGTAAGTCGGGGCCAAACGCCATGCCTATGAAGCTCAAAGCTCCACAGGCCAATCCTTTCGAAAGCATTTGGTCGCGCAGAAAATTTGATACGCTTGGAAAAAAATCCAAGGGAGAAGAGCGCCGCATGGGCCGACTCCATTTCTTCTTTTCTTTTTTTCCTGTTTCTCAACTCTATGGAATTTTACTATCATGGTTGCCCTCAACATGTTTTTTTTTTTTTTTTGTGAGGCAGAGGAAGAAAACGCTGTTGAAGGAGTATCAGCAAAGTGGAAAGGCTTCAGTTTTTATAGATAAGAGAATTGGGGAACACAATGAAACTCTGGAAGAATTTGATAAGGCTCTTCTGCGTTCTCAGCGACAAATGAAATTGAGCAAGAAAAGCAAATATAACTTGTCTGATGGAGAGGAAGATGAAGATTCAGGATTTCCAAGTCTTGGTGCATTGATTGGAAGAGATAGTTTTGATGACGATGTTCTAGCCAATGATAACGAATTTCTAGCAGATGATGACGATGATAACGTAGGCGCTGATACGAGCAAGAGTAAGTGCGCACTTGTTTATTTTAGTTTTTTTAATTCACAGGATTTGCCTTTACCAAAGGATAGAGGTGTTATGGAAGGAGAGGAAAAGAGACACAAAAGCAAGAAAGAAGTGATGGCAGAGATCATTGCAAAGAGCAAATTTTTTAAGGCAGAGAAAGCAAAAGCTAAGGAAGAAAATGAGCGTTTTGTTGAGGAATTGGACCAAAAATTTGCATCCATTCAGTCTGATGCCTGGGCATCGTTTACTAATCCAGCCAACGTGAATGCTTTGAAAAATTTAGATAAACCTGATTCTTATGACAAACTATTAAAAGAGATGGCATTGGAAATGCGCGCTCGTCCTTCCGATAGAATAAAAACACCAGAAGAGGTTGCCCAAGAGGAGCGAGAACGATTGGAGCATTTAGAGGAAGAGCGGCAGAAGAGAATGCATGCTGATGATGAATTCACTGATGAGGAAAATGAAGAAGCTGATAAATCATATGCACTGAAGCCAAGACCTATCTCTGGGGATGATTTGGGAGACTCCTTCACTGTTGATGATGAGCCCAATAGTACAAAGGGTTGGGTGGATAAGATTCTCAGGCAAAACAACGATGAAGATGATGATTCTTCTGGAAATTCAGATTACGATGATGATCACGACGCTGATGAAAGAACTGGTGAAGATGCTGGTGACGGAAAATCAAATGGAGGAGAAACGGATGAAGATGATGGTGATGAAGGTTCTGAGGAAGAGCAAGACGGGCATAAAATTGCTTTGAAGGACTGGGAACAGAGTGATGATGATATTATTGAGACAAATTTAGAAGCAGATGAAGAAGAAAGTAAAGAAAAAGAACTTCGTGGAAACAGAGTTGGTAAAGAGTGCAATGATGTTGCTAGTATTAGTAAAACTTATCCAAGCCACGCTGAAGCAAAGAAATTTGATGGGAAGGCTAAACGTCCTCAACGCTTTGAAATACCATATATTATTGAGGCTCCAAAAAGCTTGGAAGAATTTTCATCCCTGCTAAATAATTGTTCCGGTGCTGACACAATCTTGATAATCGATCGAATTCGTGCGACAAATGCAATCAAGTTGGCCTCCGAAAATCTTAAGAAAATGCAAGTTTTCTACGGTGTCCTCTTGCAGTATTTTGCTGTTTTAGCAAGTAAAAAGCCATTGAAAATAGAGTTATTAAATTTGCTAGTGAAACCATTGATGGAGATGAGTGTCGAGATTCCATATTTTGCTTCAATTTGTGCTCGCCAGAGGTTGTTGCACATGCGAACTCAATTTTGCGAGATTGTTAAGGATCCAAAAAAAAGTGCATGGCCTACGTCAAAGACGATGTTCCTCTTGAGGCTTTGGGCAATGATATTTCCATGCTCTGACTTTCGTCATGCAGTAATGACCCCATCAATATTGTTGATGTGTGAATATCTGATGCGCTGTCCTATTGTTTCTGGCCGTGATGTTGCAATCGGGTCTTTCCTGTGTTCCATGCTTCTATCCGTGAGTAAACAATCTTTGAAGTTCTCTCCTGAACCCATACTCTTTATCCAAAATTGCCTGACGGCGGTTGTGGGTAGAAAATCAACTCAAAGTCGTCAGTTTTATCATCTAGAGGAGTCAAAAGAAGTAGGGTCACTACTGCACGTACAAAATTTCGCAAGTGAAATTAAACCTCTGAACTTCTTCGCCATAATGGACATGCCTGAGGACTCTTCCTTCTTCAGCTCTGACAATTTCAGGGCTGGTTTATTAATGACGATTATTGAAAACCTGCTTGGATGTGCTAATATCTATGACAAAATTAGTTCCTTTCCTGAGATTTTCTCGCCTATTTTGTCGCTGCTGCTTGAAATGGCATCTCAGGCAAACTTGCCAGATGCATTGCGGGATAAAGTCAGAAGTGCAGAGCAACTTATAAAGGCTAAGGTAGATGAACATCAAATGATAAGGCGGCCACTTCAAATGCGGAAAAATAAGCCTGTGCCAGTCAAATTACTCAATCCTAAATGCGAGACTGATTTTGTCAGGGGTAGAGATTATGATCCGGACCATGACCGGGTGGTGGCAAGAAAGTTGAAGAAACTCATAAAACGGGAAGCTAAGGGGGCAGCCCGTGAATTACGAAAAGACAATCATTTCTTGTTTGAGGTAAAGGAAAAGGAGAAGGCAGCATTGGAAGAAGAAAGGGTGGAGAAGTATGGAAAAGCAAGGGCCTTCCTTCAAGAGCAAGAGCACGCCTTCAAATCTGGACAATTCGGAAAAGGCAAGAAGAGAAGGAGATAA 2901 41.05 MAKTSNHRSSQGKTENNKKKKQKKKSKSGPNAMPMKLKAPQANPFESIWSRRKFDTLGKKSKGEERRMGRLHFFFSFFPVSQLYGILLSWLPSTCFFFFFVRQRKKTLLKEYQQSGKASVFIDKRIGEHNETLEEFDKALLRSQRQMKLSKKSKYNLSDGEEDEDSGFPSLGALIGRDSFDDDVLANDNEFLADDDDDNVGADTSKSKCALVYFSFFNSQDLPLPKDRGVMEGEEKRHKSKKEVMAEIIAKSKFFKAEKAKAKEENERFVEELDQKFASIQSDAWASFTNPANVNALKNLDKPDSYDKLLKEMALEMRARPSDRIKTPEEVAQEERERLEHLEEERQKRMHADDEFTDEENEEADKSYALKPRPISGDDLGDSFTVDDEPNSTKGWVDKILRQNNDEDDDSSGNSDYDDDHDADERTGEDAGDGKSNGGETDEDDGDEGSEEEQDGHKIALKDWEQSDDDIIETNLEADEEESKEKELRGNRVGKECNDVASISKTYPSHAEAKKFDGKAKRPQRFEIPYIIEAPKSLEEFSSLLNNCSGADTILIIDRIRATNAIKLASENLKKMQVFYGVLLQYFAVLASKKPLKIELLNLLVKPLMEMSVEIPYFASICARQRLLHMRTQFCEIVKDPKKSAWPTSKTMFLLRLWAMIFPCSDFRHAVMTPSILLMCEYLMRCPIVSGRDVAIGSFLCSMLLSVSKQSLKFSPEPILFIQNCLTAVVGRKSTQSRQFYHLEESKEVGSLLHVQNFASEIKPLNFFAIMDMPEDSSFFSSDNFRAGLLMTIIENLLGCANIYDKISSFPEIFSPILSLLLEMASQANLPDALRDKVRSAEQLIKAKVDEHQMIRRPLQMRKNKPVPVKLLNPKCETDFVRGRDYDPDHDRVVARKLKKLIKREAKGAARELRKDNHFLFEVKEKEKAALEEERVEKYGKARAFLQEQEHAFKSGQFGKGKKRRR 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1289506 1295941 + Bma000297.2 Bma01g00132 74649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00132 966 Coils Coil 252 272 - -
Bma01g00132 966 MobiDBLite consensus disorder prediction 317 355 - -
Bma01g00132 966 MobiDBLite consensus disorder prediction 452 468 - -
Bma01g00132 966 MobiDBLite consensus disorder prediction 410 426 - -
Bma01g00132 966 PANTHER NOP14 19 966 IPR007276 GO:0032040
Bma01g00132 966 MobiDBLite consensus disorder prediction 392 409 - -
Bma01g00132 966 Coils Coil 325 362 - -
Bma01g00132 966 MobiDBLite consensus disorder prediction 1 38 - -
Bma01g00132 966 MobiDBLite consensus disorder prediction 317 468 - -
Bma01g00132 966 Pfam Nop14-like family 102 951 IPR007276 GO:0032040
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00132 K14766 NOP14, UTP2; nucleolar protein 14 - jre:108989383 982.245
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g5 Blo01g00462 . Bda01g02118 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0893 . . . . . . . . . . . . Bpe02g02306 Bma01g00132 . . . . . . . . . Cpe07g00094 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008534 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00132 Bma_Chr01 FPKM 18.753273 19.199348 19.768118 19.207062 16.488405 17.342228 15.669993 27.184361 26.038248 27.624678