Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00134 ATGAGAGCAGGGAAATCGAATCAGGAAGAAGACGAGTTTGAGGAGGAAGACTTCATTTCCAACAAAGAAGGCCCTTCTTCGACTTCTATTTCTAACATTAATAGCAACACCAAAGATGCTAAGAACAGCGATAAGGCTAATGCAATTCGGTCCAAGCATTCTGTTACAGAGCAGCGAAGACGAAGCAAGATCAATGAGAGGTTCCAGATGTTGAGAGATCTGATACCTCATAGTGATCAAAAGAGAGATACAGCATCTTTCCTGCTGGAGGTGATCGAGTATGTTCAGTATTTACAGGAAAAGGTGCAGAAGTATGAGGGTTCATACCCGATCTGGAATGGAGAGCCTTCCAAATTAATGCCATGGAGAAATAGTCATTGGCGGGTCCAGAGTTTTGCCGGTCAATCACCTACTGTAAATAACGGTTCGTTCCCGGGATTAACATTTCTGGGTAAAGTTGACGATAATAATATTCCGGTCGCACAGAACCTGGAAGATTCCCTTGCAAACAGGGGCGTAGGTGATATTTCAAGTATAGGGGCTGCTTTGCAAGTTCCTATGCGGGTGAATGTCCTGTCTTCTGTCCGAAGAGATGGAATGGCTGCTCAGCCTCTTCAAATGCCGGCTTCTGATGCACCCTCAGCTGAGTGTCTAGTCACATCTGAGCTGTCAAAGCAGCCGGAGAAGGCGAATATCGAAGGCGGAACTATCAGAATTTCAAGTCCTTACTCAGAAGGGTTTGTTCTTGCTTTAACTCAAGCCCTCCAGGATGCTGGGGTGGATCTATCTCAGGCCAGTATCTCTATTCAGATCGATATCGGAAAGAATGCAAACAAAGCACCACCTTCCACAACATCTGTTTTTATGGTATTGCTTTTAAATAATGTTAAGTTTATCTTTTAA 903 44.08 MRAGKSNQEEDEFEEEDFISNKEGPSSTSISNINSNTKDAKNSDKANAIRSKHSVTEQRRRSKINERFQMLRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPIWNGEPSKLMPWRNSHWRVQSFAGQSPTVNNGSFPGLTFLGKVDDNNIPVAQNLEDSLANRGVGDISSIGAALQVPMRVNVLSSVRRDGMAAQPLQMPASDAPSAECLVTSELSKQPEKANIEGGTIRISSPYSEGFVLALTQALQDAGVDLSQASISIQIDIGKNANKAPPSTTSVFMVLLLNNVKFIF 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1304591 1306573 - Bma000299.4 Bma01g00134 74651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00134 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 119 IPR036638 GO:0046983
Bma01g00134 300 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 287 IPR044295 GO:0003700|GO:0006351|GO:0046983
Bma01g00134 300 SMART finulus 54 104 IPR011598 GO:0046983
Bma01g00134 300 MobiDBLite consensus disorder prediction 1 63 - -
Bma01g00134 300 MobiDBLite consensus disorder prediction 43 63 - -
Bma01g00134 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Bma01g00134 300 Gene3D - 46 111 IPR036638 GO:0046983
Bma01g00134 300 CDD bHLH_AtBIM_like 47 123 - -
Bma01g00134 300 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Bma01g00134 300 PANTHER TRANSCRIPTION FACTOR BIM2 1 287 - -
Bma01g00134 300 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00134 Bma-Chr1:1304591 Bma13g00200 Bma-Chr13:2773442 1.03E-22 dispersed
Bma01g00134 Bma-Chr1:1304591 Bma12g00955 Bma-Chr12:41484314 8.77E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56606 PF00010 HLH 2.30E-13 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00134 - - csv:101217750 343.199