Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00134 | ATGAGAGCAGGGAAATCGAATCAGGAAGAAGACGAGTTTGAGGAGGAAGACTTCATTTCCAACAAAGAAGGCCCTTCTTCGACTTCTATTTCTAACATTAATAGCAACACCAAAGATGCTAAGAACAGCGATAAGGCTAATGCAATTCGGTCCAAGCATTCTGTTACAGAGCAGCGAAGACGAAGCAAGATCAATGAGAGGTTCCAGATGTTGAGAGATCTGATACCTCATAGTGATCAAAAGAGAGATACAGCATCTTTCCTGCTGGAGGTGATCGAGTATGTTCAGTATTTACAGGAAAAGGTGCAGAAGTATGAGGGTTCATACCCGATCTGGAATGGAGAGCCTTCCAAATTAATGCCATGGAGAAATAGTCATTGGCGGGTCCAGAGTTTTGCCGGTCAATCACCTACTGTAAATAACGGTTCGTTCCCGGGATTAACATTTCTGGGTAAAGTTGACGATAATAATATTCCGGTCGCACAGAACCTGGAAGATTCCCTTGCAAACAGGGGCGTAGGTGATATTTCAAGTATAGGGGCTGCTTTGCAAGTTCCTATGCGGGTGAATGTCCTGTCTTCTGTCCGAAGAGATGGAATGGCTGCTCAGCCTCTTCAAATGCCGGCTTCTGATGCACCCTCAGCTGAGTGTCTAGTCACATCTGAGCTGTCAAAGCAGCCGGAGAAGGCGAATATCGAAGGCGGAACTATCAGAATTTCAAGTCCTTACTCAGAAGGGTTTGTTCTTGCTTTAACTCAAGCCCTCCAGGATGCTGGGGTGGATCTATCTCAGGCCAGTATCTCTATTCAGATCGATATCGGAAAGAATGCAAACAAAGCACCACCTTCCACAACATCTGTTTTTATGGTATTGCTTTTAAATAATGTTAAGTTTATCTTTTAA | 903 | 44.08 | MRAGKSNQEEDEFEEEDFISNKEGPSSTSISNINSNTKDAKNSDKANAIRSKHSVTEQRRRSKINERFQMLRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYPIWNGEPSKLMPWRNSHWRVQSFAGQSPTVNNGSFPGLTFLGKVDDNNIPVAQNLEDSLANRGVGDISSIGAALQVPMRVNVLSSVRRDGMAAQPLQMPASDAPSAECLVTSELSKQPEKANIEGGTIRISSPYSEGFVLALTQALQDAGVDLSQASISIQIDIGKNANKAPPSTTSVFMVLLLNNVKFIF | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1304591 | 1306573 | - | Bma000299.4 | Bma01g00134 | 74651 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00134 | 300 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 46 | 119 | IPR036638 | GO:0046983 | |
Bma01g00134 | 300 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 1 | 287 | IPR044295 | GO:0003700|GO:0006351|GO:0046983 | |
Bma01g00134 | 300 | SMART | finulus | 54 | 104 | IPR011598 | GO:0046983 | |
Bma01g00134 | 300 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Bma01g00134 | 300 | MobiDBLite | consensus disorder prediction | 43 | 63 | - | - | |
Bma01g00134 | 300 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 98 | IPR011598 | GO:0046983 | |
Bma01g00134 | 300 | Gene3D | - | 46 | 111 | IPR036638 | GO:0046983 | |
Bma01g00134 | 300 | CDD | bHLH_AtBIM_like | 47 | 123 | - | - | |
Bma01g00134 | 300 | Pfam | Helix-loop-helix DNA-binding domain | 50 | 99 | IPR011598 | GO:0046983 | |
Bma01g00134 | 300 | PANTHER | TRANSCRIPTION FACTOR BIM2 | 1 | 287 | - | - | |
Bma01g00134 | 300 | MobiDBLite | consensus disorder prediction | 22 | 42 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00134 | Bma-Chr1:1304591 | Bma13g00200 | Bma-Chr13:2773442 | 1.03E-22 | dispersed | |
Bma01g00134 | Bma-Chr1:1304591 | Bma12g00955 | Bma-Chr12:41484314 | 8.77E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56606 | PF00010 | HLH | 2.30E-13 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00134 | - | - | csv:101217750 | 343.199 |