Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00137 ATGGCTCCTGTTCTTGCCAGAAGCTTGGCTAATGCTTCTCTCGCTTCGTTTCCATCTTCTTCGCCGTTCACTCGCGGGACTTCTAACAAGGGGTTGAGTCTCAGGAGTGCTTTTCTTCCCCGTAATGGGATCAGACACGGCTTCTCTTGTGGTGGGTTGAAGTGGAAGCTTGAGAAGAGGAATAGTCGGGTTGCTGTGCGGTGCGAGGCGGCTGTGGCGGAGATAGACGGTACGGAGACTGCTGGTGAAAAATATGAGTATCAGGCTGAGGTTAGTCGTTTGCTTGATTTGATCGTTCATAGTCTGTACAGCCACAAAGAAGTCTTCTTGAGGGAGCTTGTGAGTAACGCCAGCGATGCTCTGGACAAATTGAGATTCTCAAGTGTGACTGATCCCTCTCTGCTTGGTGATGAAAATAAGGACCTTGGAGCTGATAATGGTTTGATTGGTCAGTTTGGTGTTGGTTTCTATTCAGCTTTTCTAGTTGCTGAGAAGGTTGTTGTTTCTACCAAAAGCCCAAGATCAGATAAGCAATATGTTTGGGAAGCAAATGCTGATAGTAGCTCATATGTGATTAAAGAGGAGACTAATCCTGAAAATCTCTTGCTACGTGGAACACAAATAACTCTCTTTTTGAGGGAAGATGACAAGTATGAGTTCTCTGATCCCACTAGAATTCAAGGTTTGGTGAAGAATTACTCGCAGTTTGTTTCCTTCCCTATTTATACATGGCAGGAAAAGTCAAAAACTATCGAGGTAAGATGTCAAGAAGCTTATAGGTTCGGCCATTACTTTCAGGATGAGAAGAAAAAGAAGAAAACCACCAAAACCGAAAAGTATTGGGACTGGGAACTAACCAATGAAACAAAGCCAATTTGGATGCGGAGTTCAAAGGAAGTTCAAAAGGAGGAGTATAATGAATTCTACAAGAAAACTTTTAACGAGTTCTTAGATCCGCTCGCACATACTCATTTTACAACTGAGGGCGAAGTAGAGTTTAGGAGTGTTCTTTATATTCCTGGGATGGGACCTCTTAACAATGAGGATGTAATAAACCCAAAAACGAAGAACATTCGTTTATACGTGAAACGTGTATTTATCTCTGATGATTTTGATGGTGAGCTGTTTCCGCGGTACTTGAGTTTTGTGAAAGGTGTGGTGGATTCTGATGATCTTCCTCTTAATGTTTCGCGAGAGATTCTCCAAGAAAGCCGAATTGTAAGAATAATGAGGAAGCGACTTGTCAGGAAATCGTTCGACATGATTCAAGATATTTCCGAAAGTGAAAACAAAGAGGACTACAAAAAACTTTGGGAGAATTTTGGCCGATTTTTAAAACTGGGATGTATAGAGGACACTGGAAATCACAAACGCATAACACCTTTGCTTCGGTTTTACACGTCAAAAAGCGAGGAGGACTTGATAAGTTTGGATGATTATGTCGAAAACATGGGCGAGAATCAAAAGGCTATTTATTACTTGGCAACTGATAGTTTAAAAAGTGCCAAGACTGCTCCATTCTTGGAGAAGTTGCTCCAGAAAGATATTGAGGTTCTCTACTTGATTGAACCAATCGATGAAGTTGCAATCCAGAACTTGCAGACATACAAAGAAAAGAAGTTTGTTGACATTAGCAAGGAAGATCTAGAGCTCGGCGATGAGGACGAGGTCAAAGAAAGAGAAACTAAGCAAGAATACCTTCTTCTCTGTGACTGGATTAAGCAACAATTGGGGGACAAAGTTGCAAAAGTTCAAATCTCTAAGCGGTTAAGCTCATCTCCTTGCGTTCTCGTTTCTGGAAAGTTTGGATGGTCTGCTAATATGGAAAGGTTGATGAAGGCGCAGGCCCTCGGAGATACGTCAAGCCTCGAGTTCATGAGGGGAAGGAGAATTTTGGAGATCAATCCAGATCATCCAATCATTAAGGATCTAAATGCTGCATGCAGAAATGCACCCGAAAGCGGGGAAGCCAAGAGAGCCGTTGATCTGTTATATGACACAGCTCTAATTTCTAGTGGATTCACCCCTGACAGCCCAGCTGAGTTGGGAAGTAAGATATATGACATGATGGCAATGGCGTTGGGAGGAAGATGGGGAAGATCAGAAGAACCAGAGATGGAAGAAGATAGCACAGAATCTGAAGAAGTACAAGTTATTGAGCCATCAGAAGTGAGGACAGAGACTGACCCTTGGCAGGATTAG 2202 42.6 MAPVLARSLANASLASFPSSSPFTRGTSNKGLSLRSAFLPRNGIRHGFSCGGLKWKLEKRNSRVAVRCEAAVAEIDGTETAGEKYEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFSSVTDPSLLGDENKDLGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPRSDKQYVWEANADSSSYVIKEETNPENLLLRGTQITLFLREDDKYEFSDPTRIQGLVKNYSQFVSFPIYTWQEKSKTIEVRCQEAYRFGHYFQDEKKKKKTTKTEKYWDWELTNETKPIWMRSSKEVQKEEYNEFYKKTFNEFLDPLAHTHFTTEGEVEFRSVLYIPGMGPLNNEDVINPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKSFDMIQDISESENKEDYKKLWENFGRFLKLGCIEDTGNHKRITPLLRFYTSKSEEDLISLDDYVENMGENQKAIYYLATDSLKSAKTAPFLEKLLQKDIEVLYLIEPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKERETKQEYLLLCDWIKQQLGDKVAKVQISKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIIKDLNAACRNAPESGEAKRAVDLLYDTALISSGFTPDSPAELGSKIYDMMAMALGGRWGRSEEPEMEEDSTESEEVQVIEPSEVRTETDPWQD 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1320533 1325654 + Bma000302.1 Bma01g00137 74654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00137 733 MobiDBLite consensus disorder prediction 698 733 - -
Bma01g00137 733 Hamap Chaperone protein HtpG [htpG]. 80 691 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00137 733 Gene3D - 547 694 IPR037196 -
Bma01g00137 733 ProSitePatterns Heat shock hsp90 proteins family signature. 103 112 IPR019805 GO:0005524|GO:0006457|GO:0051082
Bma01g00137 733 PRINTS 90kDa heat shock protein signature 83 103 IPR020575 -
Bma01g00137 733 PRINTS 90kDa heat shock protein signature 104 126 IPR020575 -
Bma01g00137 733 Gene3D - 139 262 IPR036890 -
Bma01g00137 733 SUPERFAMILY Ribosomal protein S5 domain 2-like 289 547 IPR020568 -
Bma01g00137 733 SUPERFAMILY HSP90 C-terminal domain 569 690 IPR037196 -
Bma01g00137 733 PIRSF HSP90_HTPG 134 730 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00137 733 PIRSF HSP90_HTPG 53 146 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00137 733 Gene3D - 66 138 IPR036890 -
Bma01g00137 733 MobiDBLite consensus disorder prediction 718 733 - -
Bma01g00137 733 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 22 137 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00137 733 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 138 718 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma01g00137 733 Gene3D - 460 546 - -
Bma01g00137 733 Gene3D - 287 459 - -
Bma01g00137 733 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83 247 IPR036890 -
Bma01g00137 733 PANTHER HEAT SHOCK PROTEIN 90-5, CHLOROPLASTIC 22 137 - -
Bma01g00137 733 PANTHER HEAT SHOCK PROTEIN 90-5, CHLOROPLASTIC 138 718 - -
Bma01g00137 733 Pfam Hsp90 protein 219 714 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00137 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - zju:107429130 1214.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00137 Bma-Chr1:1320533 Bma12g00860 Bma-Chr12:39399544 0 dispersed
Bma01g00137 Bma-Chr1:1320533 Bma13g00489 Bma-Chr13:9172593 2.98E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1005 Blo01g00465 . Bda01g01785 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0515 . . . . . . . . . Bpe02g01962 Bma01g00137 . . . Cmo15g00882 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001704 2 2 2 3 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 3 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00137 Bma_Chr01 FPKM 43.861423 45.941422 49.002853 49.01178 48.996159 44.509808 49.706635 48.763874 54.090469 56.752422