Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00138 ATGGATTTAGGGGGGAAGGACGATTATGAACTAGAAAACAGGACTGAGAATTCTGTCAACTGTTCTCCAAGTATGTCCTCTGGCTGGCGATTTGGTGGAGCCCAGCTCTTGAAAACGTCAATGGGATTGGTTAACCCCGCAAATTCCTCTGGGAAAGAGGGTCTAATTTTTCCTTCATGTTCATCGGCTTCGATGGTGGATTCTTTTGGTCCAAACTTCAATGGTGGATTTTTTGATCTCTACAGTAACGTTAGTTCTTCAAACCTTGTTGGAATTAGCAGAGATGGTGCAGGTTCAATGAGAAAAACTTCTGATAGAAGTCTTGATATGAGTTGGAACCCACCAAATCAAACGAGAGGAAGTAATTTACCCGGTTTTGCTCACCCGAGCTTACCTCAATTTCCGGCTGATTCTGCATTCATCGAGCGGGCAGCTAGATTATCCTGCTTCAATGGTGGGAATCTTATGGAAATAGCTAGTCCTTTCGGTATTCCTCAATCCATGCCTCTTTATTCTTGGAGTTCGGGGACGAATCCGAGCAATCAAGAAATTAACTCCATTGATGGGATGAGATTAGCTACTGCGGGGCAACCTCAAAAACAAGAGATTAGTGATATAGGAGAAGCCTCCATGGATGTTTGTTTGGAGCATGGATCTGAGAATCCTGAGAATGATGGAAAAAATGAGAACCTTCTCAGATCTCACAATGAAGAAAAACGCACTATCAGCGGGTCAGGCAGTGAATCGGAAGACGAGATGAGTGGTGGTGCTCAAGATGAGCCGTCGACGGCGGTGGGTAGAGAAGAAGAACCTTCCGGCAAGGGAATCGGACCCAAAAAAAGGAAGAGGGTTAGGCAGAACACTGGACTTGATCAAGCCAAAGATGGCGAATCTGCCAACGATGATAAGGAGATTGAACAGAAGGACGATCAAAACCCATATCCAGTTGCCCACAAATCTACTGGAAAACACAGTAAACAAGGATCTCAACCATCCGATGTTAGAAGGGAGAAGATCAGTGAAAGGATGAAGTTTCTTCAAGATCTTGTTCCGGGTTGCAGCAAGGTCACCGGCAAGGCGGTGATGCTAGACGAAATAATAAATTACGTCCAGTCGCTCCAACGACAAGTAGAATTTTTATCGATGAAACTCGCCACTGTCAATCCGAGGATGGATTTCAATATTGATGGGCTTGCCAAAGATATTCTTCAAGCAAGGGCTGGTTCATCATCTTCATTGGGCTATTCTCCAGACATATCTATGGCTTATCCTCCATTACAACCCTCCCTACCAAATGTGTGGGAGGTGGATGAGCTGCACCATGTTTTCCAAATGAGCTATGCAGCTGCTGCTGCTTCGAATAGCCAAAGTGTTGATGGTAAATTCTCTAATTAG 1395 44.66 MDLGGKDDYELENRTENSVNCSPSMSSGWRFGGAQLLKTSMGLVNPANSSGKEGLIFPSCSSASMVDSFGPNFNGGFFDLYSNVSSSNLVGISRDGAGSMRKTSDRSLDMSWNPPNQTRGSNLPGFAHPSLPQFPADSAFIERAARLSCFNGGNLMEIASPFGIPQSMPLYSWSSGTNPSNQEINSIDGMRLATAGQPQKQEISDIGEASMDVCLEHGSENPENDGKNENLLRSHNEEKRTISGSGSESEDEMSGGAQDEPSTAVGREEEPSGKGIGPKKRKRVRQNTGLDQAKDGESANDDKEIEQKDDQNPYPVAHKSTGKHSKQGSQPSDVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNIDGLAKDILQARAGSSSSLGYSPDISMAYPPLQPSLPNVWEVDELHHVFQMSYAAAAASNSQSVDGKFSN 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1326386 1328504 - Bma000303.1 Bma01g00138 74655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00138 464 SMART finulus 334 379 IPR011598 GO:0046983
Bma01g00138 464 MobiDBLite consensus disorder prediction 216 335 - -
Bma01g00138 464 MobiDBLite consensus disorder prediction 104 123 - -
Bma01g00138 464 Gene3D - 333 392 IPR036638 GO:0046983
Bma01g00138 464 MobiDBLite consensus disorder prediction 218 246 - -
Bma01g00138 464 MobiDBLite consensus disorder prediction 263 277 - -
Bma01g00138 464 MobiDBLite consensus disorder prediction 1 24 - -
Bma01g00138 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 373 IPR011598 GO:0046983
Bma01g00138 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 392 IPR036638 GO:0046983
Bma01g00138 464 MobiDBLite consensus disorder prediction 284 313 - -
Bma01g00138 464 PANTHER TRANSCRIPTION FACTOR BHLH49 334 433 - -
Bma01g00138 464 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 334 433 IPR024097 GO:0006355
Bma01g00138 464 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 333 IPR024097 GO:0006355
Bma01g00138 464 MobiDBLite consensus disorder prediction 97 123 - -
Bma01g00138 464 PANTHER TRANSCRIPTION FACTOR BHLH49 44 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00138 - - - zju:107429134 431.409
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00138 Bma06g00747 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00138 Bma-Chr1:1326386 Bma06g01401 Bma-Chr6:50785189 6.30E-38 dispersed
Bma01g00138 Bma-Chr1:1326386 Bma06g00747 Bma-Chr6:38766134 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1010 Blo01g00466 Blo16g01072 Bda01g02113 Bda11g01162 Bpe13g01361 . . . Cmo04g01641 Cmo18g01098 . Cma18g01076 Car04g01621 Car18g00999 . Cpe09g00247 Cpe01g01393 Bhi07g01428 Tan04g0941 . . . . . Cla05g02367 Cam05g2537 Cec05g2567 Cco05g2606 Clacu05g2534 Cmu05g2393 Cre05g2509 . . . Cone9ag0512 Lsi04g00328 Csa05g02541 Chy10g01083 Cme10g00327 . . . Bda11g01162 . Bpe02g02301 Bma01g00138 Bma06g00747 . . Cmo15g00881 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003071 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00138 Bma_Chr01 FPKM 17.482283 17.371172 172.785416 160.209671 44.727829 58.334595 44.722424 122.139137 124.101852 114.521828