Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00140 ATGGAGGTAAGAAGAGAGAGTGTGTATTTGTGTTGTTTGGCTCTGTCTTGCTTATGGGCTGCTGCAAATTGCTTGCTCTCTGCCAAAGGAGTAAACTACGAAGTTCAAGCTTTAATGGGAATCAAGGCAGCTCTGAAGGATCCTCACTCTGTTCTGAACTGGGATGAAAATGCTGTGGATCCATGTAGCTGGAGTATGATCACTTGCTCTGCTGATAACTCTGTCATTGGTCTAGGAGCTCCAAGCCAGAATTTTTCTGGCAGTCTTTCACCCAGTATAGGAAACTTGACAAATCTGCAGTTTGTGATGCTTCAGGACAATAATATATCTGGGAAGCTCCCAACTGAAATTAGCAAGTTATCGAAGCTTCAAACGCTGTACCTTTCGAGTAACTTCTTCTCCGGTGTAATTCCGGGCTCTCTCTCCCGTTTGAACAATCTCCAGTACCTGAAGCTTAACAACAACACTCTTTCGGGTGCTATTCCTTTGTCATTCTCCAACATGTCCCAGCTGGTCTTGCTGGACCTTTCGTATAATAACTTGAGCGGTCAAGTACCCTTGTTAATGGCTAAATCATTCAATTTGGCCGGAAATCCTCTGATATGTGGCGGCAGAACAAAGCAAGACTGCGATGGAATGATGATGCCACTATCTTTGGCAGTCAATTCCTCTCAAAGTTCTCAATCTTTAGGGAGACCAAAAGGCCAGAAAATTGCTCTAGCATTTGGGACTAGCTTAGGCTCCATTTGTCTGCTAACTTTGGGCTATGGCTTCTTCTTCTGGTGGAGGCAAAGGAAAAACCAACAGATATTCTTCGATTTCAATGAGCCTCATCACGAACACGTTTGCTTAGGAAATCTGAAGAAATTCCACTTCCGAGAACTCCAAAATGCAACCAACAATTTCAGCAGCAAGAACCTGATCGGGAAGGGGGGATTCGGAAATGTATACAAAGGAATTCTTCAAGACGGAAGCGTGGTGGCGATCAAAAGACTGAAAGACGGGAACGCCATCGGAGGGGAGATCCAGTTTCAGACTGAATTAGAGATGATTAGCTTAGCAGTTCATCGGAATCTCCTCCGACTGTATGGGTTTTGCACGACGGCTTCTGAGAGACTCCTTGTTTATCCATACATGTCTAATGGAAGCGTTGCTTCCCGCCTCAAAGCAAAACCAGCCCTAAATTGGGGAACAAGAAAGAGAATCGCCTTAGGAGCAGCAAGAGGGTTGTTATACTTGCACGAACAGTGCGACCCCAAAATTATTCATCGCGATGTTAAGGCTGCAAACATACTGCTCGATGATTATTGCGAGGCTGTGGTCGGAGATTTCGGGCTTGCAAAACTGTTAGACCATCGAGATTCCCATGTGACAACTGCCGTGAGAGGAACCGTCGGCCACATCGCACCGGAGTATTTATCGACTGGCCAATCCTCCGAGAAGACTGACGTTTTCGGATTTGGAATTCTCCTTCTCGAGTTGATTTCCGGACAGAGAGCTCTTGAATTTGCTAAAGCTGCGAATCAAAAAGGCGCCATGCTTGATCTGGTGAGCAATGAGCATAACATAATTAGATTTGATCCTGCCATCAGAGGATTTTTTTTCTCATTGTTTATATTCCTGCAGGTTAAGAAAATTCACCAAGAGGGGAAGCTAGAACAGCTAGTTGACAAGGATCTGAAAAGTAATTACGACCGAATTGAGCTCGAAGAAATAGTTCGAGTAGCTCTGCTGTGCACACAATTTCTTCCAATCAATCGCCCGAAGATGTCCGAAGTGGTTCGAATGCTGGAAGGAGACGGATTGGCTGAAAAATGGGAGGCTTCGCAAAGAGCAGACTCAAGCAGGTGTAGAGCCAACGATTTCTCCTCGTCGGAGCGTTACTCCGATCTTGCCGATGATTCTTCATTGCTTACACAAGCAATGGAGCTTTCTGGACCTAGATAA 1947 45.25 MEVRRESVYLCCLALSCLWAAANCLLSAKGVNYEVQALMGIKAALKDPHSVLNWDENAVDPCSWSMITCSADNSVIGLGAPSQNFSGSLSPSIGNLTNLQFVMLQDNNISGKLPTEISKLSKLQTLYLSSNFFSGVIPGSLSRLNNLQYLKLNNNTLSGAIPLSFSNMSQLVLLDLSYNNLSGQVPLLMAKSFNLAGNPLICGGRTKQDCDGMMMPLSLAVNSSQSSQSLGRPKGQKIALAFGTSLGSICLLTLGYGFFFWWRQRKNQQIFFDFNEPHHEHVCLGNLKKFHFRELQNATNNFSSKNLIGKGGFGNVYKGILQDGSVVAIKRLKDGNAIGGEIQFQTELEMISLAVHRNLLRLYGFCTTASERLLVYPYMSNGSVASRLKAKPALNWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFAKAANQKGAMLDLVSNEHNIIRFDPAIRGFFFSLFIFLQVKKIHQEGKLEQLVDKDLKSNYDRIELEEIVRVALLCTQFLPINRPKMSEVVRMLEGDGLAEKWEASQRADSSRCRANDFSSSERYSDLADDSSLLTQAMELSGPR 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1343567 1346332 - Bma000305.1 Bma01g00140 74657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00140 648 ProSiteProfiles Protein kinase domain profile. 302 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00140 648 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 543 648 - -
Bma01g00140 648 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 4 521 - -
Bma01g00140 648 Pfam Protein kinase domain 303 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00140 648 Gene3D Transferase(Phosphotransferase) domain 1 379 617 - -
Bma01g00140 648 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 543 648 - -
Bma01g00140 648 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 4 521 - -
Bma01g00140 648 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Bma01g00140 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Bma01g00140 648 SUPERFAMILY Protein kinase-like (PK-like) 278 598 IPR011009 -
Bma01g00140 648 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Bma01g00140 648 SMART serkin_6 302 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00140 648 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Bma01g00140 648 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Bma01g00140 648 SUPERFAMILY L domain-like 34 196 - -
Bma01g00140 648 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Bma01g00140 648 MobiDBLite consensus disorder prediction 607 626 - -
Bma01g00140 648 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00140 Bma-Chr1:1343567 Bma07g00724 Bma-Chr7:18574395 0 dispersed
Bma06g00611 Bma-Chr6:32622271 Bma01g00140 Bma-Chr1:1343567 3.89E-14 dispersed
Bma01g00140 Bma-Chr1:1343567 Bma06g01441 Bma-Chr6:51107230 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66241 PF00069 Pkinase 1.30E-42 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00140 - - csin:114282611 967.222