Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00151 ATGAAGAAAGAAGATCCACCGAATTGTTCACAACCAGTACAAACCATGCAAGGGTTTCCAGACCAGTTTCTAATTCATCATCACCAGCAGATTTTTCAACATCACGAGCAAGAAAACAGCGATGTGTACGGAGGAGGAAGAGGATTGATTTTCCCTGAAGTTTCACCGGTTTTACACCCATGGTCGCTACCTCAAGTTCATCCCTTTAATCCGGCCCAGTTTGCCCCAACTCCGGTTCGACATCACAACACGTTTCAATCCCCTCCTTCGAACTCATATGATGGTTTTTTCAATCGAAGAGCTCCTGCTCTTCAGTTTGCATACGAAGTTCCGTCTTTAGAAAATCTCAGAATCCTATCAAACTCTCTTGGACAACAGATTGAAACCGGTTCGGGACCTTTTGGTCTGCAATCGGAACTGGGGAAGATGACTGCTCAAGAAATAATGGACGCTAAGGCTCTCGCTGCTTCAAAAAGCCATAGCGAGGCCGAGAGAAGAAGAAGAGAGAGAATCAACAACCATCTTGCTAAATTGCGCAGTTTACTACCCAACACCACTAAAACAGATAAAGCTTCATTACTAGCAGAAGTAATACAACACGTTAAAGAACTTAAACGAGAGACTTCTTTGATAGCAGAAACAAGTCCAGTTCCGACGGAAATGGATGAAGTGACAGTCGATGCCTCAGACGAAGATGGTACATTTGTGATCAAAGCCTCTCTTTGTTGCGAGGACCGATCTGATCTTTTGCCGGATCTCATAAAAACGTTAAAATCACTGCGTTTAAGAACAATGAAAGCAGAAATAACGACACTTGGGGGAAGAGTGAAGAACGTGTTGTTCGTCACTGGCGAAGCAGATTCAGTTAGCGACGGAGAGCAAATACAACAGCAATACTGTATAAGCTCGATTCAAGAAGCTCTTAAGGCAGTGATGGAGAAGGCCAGTGGAGATCATGATGAGTCTTCTTCTGGAAATGTTAAGAGACAAAGGACTAACAATATTAATATCCTTTAA 1017 43.07 MKKEDPPNCSQPVQTMQGFPDQFLIHHHQQIFQHHEQENSDVYGGGRGLIFPEVSPVLHPWSLPQVHPFNPAQFAPTPVRHHNTFQSPPSNSYDGFFNRRAPALQFAYEVPSLENLRILSNSLGQQIETGSGPFGLQSELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRETSLIAETSPVPTEMDEVTVDASDEDGTFVIKASLCCEDRSDLLPDLIKTLKSLRLRTMKAEITTLGGRVKNVLFVTGEADSVSDGEQIQQQYCISSIQEALKAVMEKASGDHDESSSGNVKRQRTNNINIL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1416665 1418388 + Bma000318.1 Bma01g00151 74668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00151 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 210 IPR036638 GO:0046983
Bma01g00151 338 Gene3D - 150 210 IPR036638 GO:0046983
Bma01g00151 338 PANTHER TRANSCRIPTION FACTOR BHLH30 72 338 IPR045847 GO:0003700|GO:0006355
Bma01g00151 338 PANTHER TRANSCRIPTION FACTOR BHLH30 72 338 - -
Bma01g00151 338 SMART finulus 161 210 IPR011598 GO:0046983
Bma01g00151 338 CDD bHLH_AtAIG1_like 150 228 - -
Bma01g00151 338 MobiDBLite consensus disorder prediction 313 338 - -
Bma01g00151 338 Pfam Helix-loop-helix DNA-binding domain 158 204 IPR011598 GO:0046983
Bma01g00151 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00151 Bma-Chr1:1416665 Bma15g00097 Bma-Chr15:1059794 3.46E-110 dispersed
Bma01g00151 Bma-Chr1:1416665 Bma01g02036 Bma-Chr1:75137718 1.34E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56607 PF00010 HLH 2.30E-12 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00151 - - jre:108993280 466.077