Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00153 ATGAGTTGGAGGAGAATTGCCGAGTCCTTTCAAGCTCTTTTGGCTCATGCTTTTCTGTTCTCATGCACACTTCTTCTAGCTTTTAAGCTCGATCACGCTGTTTTGTACTCTTGGTGGATGGTATTTGCCCCTTTATGGCTTTTTCATGCAATTGTGGCTCGAGGCAGATTTTCTCTTCCTGCTCCGACATTACCTCATGATCGCTATTGGGCACCGTGGCATGCTGTCATGGCTATACCATTGCTTGTTGCTTTCGAACTACTTCTTTGCATTCATCTAGGAAGTGGGGATGTTGTAAACTTGAAGATTGTTTTCACTCCTCTATTGGTCTTTGAAATAGCAATCTTGATCGATAATGTTAGGATGTGCAAGGCTTTGATGCCTGGAGAGGAGGAAACTATCAGTGATGAAATAATATGGAAGACACTCCCCCATTTCTGGGTTGCAATTTCTATGGTTTTCTTCATTGCTGCTACAATCTTCACTCTTTTGAAGCTAAGTGGAAATGCAGCTTCTCTAGGCTGGTGGGACTTATTTATAAACTTTGGGTATGAAGAATTTTACACTAATATTAATTCTTGGTGTAAAAACCTCTACCGTCCCCAACTAAAATTCTGTTTTTCGTTCTTCAGAATTGCTGAGTGCTTTGCTTTTCTTGTTTTCACAAAGTGGTATAATCCAGTAATTCATGTGAATGCTTTTAGAGAACCAAATAGGCGTTCACATACTATTCGAAACCTTGATTGGATTAGTGGCAGTATGGTTTCTTCTGATGAAGATCAGCATCAAAGTCAATTATGCAACTTACAAGACCTGGGTGGGCATTTAATAAAAGTTCTGATGATCATTTTCCAAATCTTGCTTTTTATGCGATTGGAGGGAACACCATCCAGTGTTAGACATATCCCTTGGAGGATTCTTTTTATTCCTCTTTATTTAATTCAAGGAATTGGGGCTATATTTGCTACCCATCGATTGGTAGAAAAAATTGTTCTACTATTTAGGGGATCCACTTCGCATAGATATTTTCTTCTATCGTCAAAAGCTCATGAATTTTTTGGGTTCTTGCACCATGGATCAAGATTGCTTGGTTGGTGGTCAATTGACGAAGTAAGTCGAGAGGAACAAGCTAAACTTTATTGTGGCGGATCTTCTGGGTCAGTATTCTTTACACAGATTGTGCAACTTGTTCCGTATAATACTTTCTCACCGGAGGCTGTGAAGCAAATGCCAAAATCTAATCTCATTGATGAGATTTGGAGATTACAAGCTGCTCTCAGTGAACAAACAGAAATTACGAAGTTTAGACAGCAGGAGCATGAAAGACTACAAAATGAAAAAATTCTTTGTCGAATATGCTTTGCAGAGGAGATTAACGTGGTCCTACTTCCCTGTCGGCATCACATTCTTTGCAGGTATTTTCACAGAAGCTCAGTTTTTACCTTCTCAAGGCCTTCTTTTAGTGGAAAATGCAATGAATGA 1482 39.27 MSWRRIAESFQALLAHAFLFSCTLLLAFKLDHAVLYSWWMVFAPLWLFHAIVARGRFSLPAPTLPHDRYWAPWHAVMAIPLLVAFELLLCIHLGSGDVVNLKIVFTPLLVFEIAILIDNVRMCKALMPGEEETISDEIIWKTLPHFWVAISMVFFIAATIFTLLKLSGNAASLGWWDLFINFGYEEFYTNINSWCKNLYRPQLKFCFSFFRIAECFAFLVFTKWYNPVIHVNAFREPNRRSHTIRNLDWISGSMVSSDEDQHQSQLCNLQDLGGHLIKVLMIIFQILLFMRLEGTPSSVRHIPWRILFIPLYLIQGIGAIFATHRLVEKIVLLFRGSTSHRYFLLSSKAHEFFGFLHHGSRLLGWWSIDEVSREEQAKLYCGGSSGSVFFTQIVQLVPYNTFSPEAVKQMPKSNLIDEIWRLQAALSEQTEITKFRQQEHERLQNEKILCRICFAEEINVVLLPCRHHILCRYFHRSSVFTFSRPSFSGKCNE 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1423221 1430449 + Bma000320.3 Bma01g00153 74670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00153 493 Pfam Transmembrane Fragile-X-F protein 29 313 IPR019396 -
Bma01g00153 493 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 191 - -
Bma01g00153 493 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 207 473 - -
Bma01g00153 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 424 478 IPR013083 -
Bma01g00153 493 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Bma01g00153 493 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 191 - -
Bma01g00153 493 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 207 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00153 Bma-Chr1:1423221 Bma12g00940 Bma-Chr12:41204920 4.48E-38 dispersed
Bma09g00653 Bma-Chr9:44070345 Bma01g00153 Bma-Chr1:1423221 1.20E-146 transposed
Bma01g00153 Bma-Chr1:1423221 Bma12g00937 Bma-Chr12:41121314 4.11E-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00153 - - vvi:100249082 636.336