Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00154 ATGGCCGTTGTTGCAGCAGGAGGAGTAGGTCTAGACGTGACCAAGCTTCAACCTCATCGGTTGCCACTAGCTTCCCACTTTCTCGGTAAAAAGCTTAGAATCAAACCCAACTTCGATTTTCGTCCAAATTCGAGAATCGATGCCTCTACTGTGAGAAAATCCCTTGTTTTGGCTTCGGGAGGGGGGTTAATCGATGCGATTCATGGCCTTTTTCTGGGTGTTGGGGTGGGGCTTCCTTGCACAGTTATGGAGTGTGGTGATATTATCTACAGAAGCACTCTTCCGAAGCCCAGCGGCTTAACAGTCACAATTCCTGGTGCTATTCTTGCTCTTGGCACTGTTTCTTATCTCTGGGCAACTCCTGGTGTTGCTCCCGGCTTTTTTGATATGTTTGTTCTTGCATTTGTGGAAAGAATTGTTAGACCCACTTTTAAAAAGGATGATTTTGTTTTGGGGAAGAAGTTGGGAGAGGGAGCTTTTGGTGTGGTTTACAGAGTTTCGTTAGCGAAGAAGCCTTCCGATGAGAAAGAAGGCGATTTAGTGCTGAAGAAGGCTACCGAGTATGGTGCAGTCGAGATTTGGATGAATGAGCGAGCCCGAAGAGCTTGTGCAAATAGTTGTGCAGATTTTGTTTATGGCTTTCTTGAGGGCTCTTCCAAAAAAGGATCTGAATATTGGCTCATTTGGCGGTTTGAAGGGGAGGCCACTTTGGCTGATTTGATTCAAAGCAAAGATTTCCCTTACAATGTAGAGACTATGATTCTTGGTGCAGCTCAAGAGTTGCCCAAGGGGCTGGAAAGAGAGAACAAAATCATTCAGACTATCATGAGACAGCTCTTGTTTGCATTGGATAGTCTTCATTCGGTCGGAATTGTTCATCGTGATATAAAGCCACAAAATATCATTTTCTCTGAAGCAGGGTCTTGTACGTTCAAAATCATCGATCTTGGAGCTGCAGCTGATTTAAGAGTAGGCATTAACTATATTCCGAAGGAATTTCTTCTGGATCCGAGATATGCCGCCCCCGAGCAATACATCATGAGTACACAAACTCCATCTGCTCCATCAGCACCTGTAGCAACTGCACTTTCCCCTGTTCTTTGGCAGATGAATCTTCCTGATAGATTCGACATCTATAGTGCCGGTCTCATCTTCTTACAAATGGCATTTCCCGGATTTCGAACAGACAGCAGTCTCATACAATTCAACAGGCAATTGAAGAGGTGTGATTATGACTTGGTAGAATGGAGGAAAGGCGTGGAGCAGCGGGCTAGCCCAGAACTCCGGAAAGGATTCGAATTGCTCGATTTAGACGGAGGAATTGGGTGGGAACTTTTGACATCGATGGTTCGATACAAGGCTAGACAAAGAACCAGTGCAAAGGCAGCTTTGGCTCATCCATATTTCGACCGAGAAGGCCTTCTGGCATTATCGTTTATGCAGAAACTCAGACGACATTTTTTTCGAGCAACTCAGAAGGATTATAGTGAAGCTGCCAGCTGGGTTATCGGGTTGATGGCTAAATCAGGAACTAAGCAAGTCGGTGGCTTCACTGAAGCTCAGCTTCAAGAGCTCAGAGTCAGAAATGGAGCCAAGAAGAAAGCAAGTCCTCAGAGAAATGCTCTTGCTTCAGTCCTTAAGCTTCAGAGGAAGATCATAAAGACGATAAACGAGAGCATGGACGAGCTCAATCGACCTGCAAAGAATATGTGGTGGAGAAGATGGATTCCAAGAGAGGAATAA 1743 45.21 MAVVAAGGVGLDVTKLQPHRLPLASHFLGKKLRIKPNFDFRPNSRIDASTVRKSLVLASGGGLIDAIHGLFLGVGVGLPCTVMECGDIIYRSTLPKPSGLTVTIPGAILALGTVSYLWATPGVAPGFFDMFVLAFVERIVRPTFKKDDFVLGKKLGEGAFGVVYRVSLAKKPSDEKEGDLVLKKATEYGAVEIWMNERARRACANSCADFVYGFLEGSSKKGSEYWLIWRFEGEATLADLIQSKDFPYNVETMILGAAQELPKGLERENKIIQTIMRQLLFALDSLHSVGIVHRDIKPQNIIFSEAGSCTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSAGLIFLQMAFPGFRTDSSLIQFNRQLKRCDYDLVEWRKGVEQRASPELRKGFELLDLDGGIGWELLTSMVRYKARQRTSAKAALAHPYFDREGLLALSFMQKLRRHFFRATQKDYSEAASWVIGLMAKSGTKQVGGFTEAQLQELRVRNGAKKKASPQRNALASVLKLQRKIIKTINESMDELNRPAKNMWWRRWIPREE 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1445481 1448479 - Bma000321.1 Bma01g00154 74671

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00154 580 Pfam Protein kinase domain 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00154 580 ProSiteProfiles Protein kinase domain profile. 149 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00154 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 24 580 - -
Bma01g00154 580 SUPERFAMILY Protein kinase-like (PK-like) 145 475 IPR011009 -
Bma01g00154 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Bma01g00154 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 24 580 IPR044803 GO:0004674|GO:0009579
Bma01g00154 580 Gene3D Phosphorylase Kinase; domain 1 135 230 - -
Bma01g00154 580 CDD STKc_SNT7_plant 153 469 - -
Bma01g00154 580 SMART serkin_6 149 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00154 580 Gene3D Transferase(Phosphotransferase) domain 1 251 473 - -
Bma01g00154 580 ProSitePatterns Protein kinases ATP-binding region signature. 155 183 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00154 - - - qsu:111999120 920.613
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00154 Bma-Chr1:1445481 Bma08g01215 Bma-Chr8:51190674 1.41E-93 dispersed
Bma01g00154 Bma-Chr1:1445481 Bma15g00264 Bma-Chr15:2612270 7.34E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66242 PF00069 Pkinase 1.30E-21 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00154 Bma_Chr01 FPKM 1.576955 1.421867 5.117658 5.107173 5.671528 4.516846 5.366242 0.127112 0.0 0.0