Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00157 ATGGATGGGAGTTGCATCGATGAGAGTACAGCTAGCGACACTACGTCTACTTCTCCTCTTACCAAGTCTTCTTTGCCGGCGAGTCTACGTCGTCTTGATAGCGGCGCCAGCGTTATCATAGACTCGGATTTTAATGGTGTGGAGGCGGAGTCCCGGAAGCTGCCGTCTTCTCGGTTCAAAGGCGTCGTCCCCCAGCCTAACGGACGGTGGGGATCTCAAATTTACGAGAAGCACCAGCGAGTATGGCTTGGCACTTTCAACAAAGAAGACGAAGCTGCAAGGGCATACGACGTCGCCGCCAGGCGATTCCGCGGCCGTGATGCTGTTACGAACTTCAAGCGGTCGGAGATCGGAGAAGACGAAACGGAAGAGGCGTTTTTGGTTTCCCATTCGAAGGCTGAGATCGTCGATATGCTGCGTAAGCATACATACAAAGAGGAGCTTCTGCACTGCAAGAGAAACTACAAGGCTGACGCCGTGAACGGGAAACTGAACAGAACGGAGTCAGGGTTCGGAAAATCGTTGATATCGGATCAGCGTGAGCTTCTGTTCGAAAAGGCGGTGACGCCGAGCGACGTCGGAAAGCTGAACCGGCTCGTCATCCCGAAGCAATACGCCGAGAAACACTTCCCGTTGCAGGCCGCCGGAACCGATTCGCGTAGAGGTTTTCTTTTGAATTTCGAGGATGCCGGAGGTAAAGTATGGCGGTTCAGGTATTCATACTGGAACAGTAGCCAGAGCTACGTGCTGACCAAAGGTTGGAGCCGGTTCGTGAAGGAGAAGAGCATGAACTCCGGTGACATTGTTAGCTTTTTCCGATCAACCGAAGGAGATAAGCAGCTTTATATTGGATCGAAAAAGAGGACCACAAATCCTGTCCAGACAGTGAGACTGTTTGGAGTGAATATAATGGAAGTAGAAGGAAGAGGTGGAGAAGAGAACAATGGAGGATGTAACGAGAAGAGAAGAAGAGATATGGAGCAGTGGGCAGTAGAACGTAGAAAGAAGCAAAGACTATTTGGAGTTCTGTAA 1032 50.78 MDGSCIDESTASDTTSTSPLTKSSLPASLRRLDSGASVIIDSDFNGVEAESRKLPSSRFKGVVPQPNGRWGSQIYEKHQRVWLGTFNKEDEAARAYDVAARRFRGRDAVTNFKRSEIGEDETEEAFLVSHSKAEIVDMLRKHTYKEELLHCKRNYKADAVNGKLNRTESGFGKSLISDQRELLFEKAVTPSDVGKLNRLVIPKQYAEKHFPLQAAGTDSRRGFLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSMNSGDIVSFFRSTEGDKQLYIGSKKRTTNPVQTVRLFGVNIMEVEGRGGEENNGGCNEKRRRDMEQWAVERRKKQRLFGVL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1471963 1472994 + Bma000323.1 Bma01g00157 74674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00157 343 Gene3D - 174 296 IPR015300 -
Bma01g00157 343 CDD AP2 57 112 IPR001471 GO:0003700|GO:0006355
Bma01g00157 343 Pfam AP2 domain 58 105 IPR001471 GO:0003700|GO:0006355
Bma01g00157 343 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Bma01g00157 343 MobiDBLite consensus disorder prediction 1 23 - -
Bma01g00157 343 SUPERFAMILY DNA-binding pseudobarrel domain 180 283 IPR015300 -
Bma01g00157 343 SMART B3_2 184 287 IPR003340 GO:0003677
Bma01g00157 343 CDD B3_DNA 183 274 IPR003340 GO:0003677
Bma01g00157 343 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 343 IPR044800 GO:0003700
Bma01g00157 343 ProSiteProfiles B3 DNA-binding domain profile. 184 289 IPR003340 GO:0003677
Bma01g00157 343 PANTHER PROTEIN RAV1, PUTATIVE-RELATED 1 343 - -
Bma01g00157 343 Gene3D AP2/ERF domain 57 114 IPR036955 GO:0003700|GO:0006355
Bma01g00157 343 Pfam B3 DNA binding domain 184 284 IPR003340 GO:0003677
Bma01g00157 343 ProSiteProfiles AP2/ERF domain profile. 58 113 IPR001471 GO:0003700|GO:0006355
Bma01g00157 343 SMART rav1_2 58 119 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00157 Bma15g00077 CCT
Bma01g00157 Bma14g01697 CCT
Bma01g00157 Bma15g00077 ECH
Bma01g00157 Bma14g01697 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00157 Bma-Chr1:1471963 Bma15g00077 Bma-Chr15:893677 4.11E-155 dispersed
Bma11g00635 Bma-Chr11:10967369 Bma01g00157 Bma-Chr1:1471963 1.09E-53 transposed
Bma13g00743 Bma-Chr13:23317548 Bma01g00157 Bma-Chr1:1471963 2.64E-12 transposed
Bma01g00157 Bma-Chr1:1471963 Bma14g01697 Bma-Chr14:36122169 2.77E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56608 PF02362 B3 2.60E-26 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00157 K09287 - pvy:116107511 413.69