Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00161 ATGGATACTGCTGTTTGCGGGCGGCTCGCTGTTTCACCCAAGCCCGTCTTCAATCCTAAATCAGGGGACAAAAACTCGGTCTGTAAAGGATTGCACAACAATATAGGCATTCCCGTTGCCGTATCGGCAATAGGGTCGGGCAGAGGAGGAGGATTGCTGGAGAGACCAATCATCGAAAAAACTACTCCTGGCCGAGAATCAGAGTTCGATGTCAAGAAGACGAGGAAAATGGCTCCGCCATATCGGGTAATTCTGCACAACGACGACTTCAACAAAAGAGAATATGTTGTTCAAGTTTTGATGAAGGTTATTCCGGGAATGACCCTTGACTGTGCTGTTAACATAATGCAAGAAGCCCACTACAATGGCTTGTCAGTGGTGATTATTTGTGCCCAGGCCGACGCGGAAGACCACTGCATGCAGCTCAGAGGCAACGGCCTTTTGAGCTCCATCGAGCCGACCGGTGGTGGGTGC 474 50.21 MDTAVCGRLAVSPKPVFNPKSGDKNSVCKGLHNNIGIPVAVSAIGSGRGGGLLERPIIEKTTPGRESEFDVKKTRKMAPPYRVILHNDDFNKREYVVQVLMKVIPGMTLDCAVNIMQEAHYNGLSVVIICAQADAEDHCMQLRGNGLLSSIEPTGGGC 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1517128 1518720 + Bma030173 Bma01g00161 74678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00161 158 Gene3D - 75 153 IPR014719 -
Bma01g00161 158 Pfam ATP-dependent Clp protease adaptor protein ClpS 78 144 IPR003769 GO:0030163
Bma01g00161 158 PANTHER BNAA07G24510D PROTEIN 1 158 - -
Bma01g00161 158 PANTHER ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC 1 158 IPR022935 GO:0006508
Bma01g00161 158 SUPERFAMILY ClpS-like 75 152 IPR014719 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00161 K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS - zju:107429492 276.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00161 Bma-Chr1:1517128 Bma06g00003 Bma-Chr6:178713 6.86E-70 dispersed
Bma01g00161 Bma-Chr1:1517128 Bma06g00029 Bma-Chr6:589431 7.64E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g275 Blo01g00491 . Bda01g02087 . . . . . . Cmo18g01053 . . . Car18g00962 Sed06g1868 Cpe09g00281 . Bhi07g01359 Tan04g0892 Cmetu10g1801 . Hepe01g1215 . . . . . . . . . . . . . Lsi04g00281 . Chy10g01123 Cme10g00283 . . . . . Bpe02g02278 Bma01g00161 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002047 1 4 1 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 1 2 2 2 2 2 2 4 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00161 Bma_Chr01 FPKM 39.135094 43.065559 27.954922 28.577957 30.346476 29.672958 31.075457 14.994576 13.698422 14.053713