Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00164 ATGGAGACGTTGGCGCAGGAGGTGGTAACGGCTTCACCGTCGGATAGAACTACGACGATGTTTGGATTCGTTGCCTGGGAGGAGGTTTTTGTGTCGAGCGATAAAGGGAGGAGAGAGGTCCATTATTATCTGAAGCGCGAAGACGGGAGCTCAGATCTGGCGGTGATAGGGAAGGAACGGAGCTTGAGGCACATGTCTTATGGGTATGCGATTCGTAATCGAGCTCTTGTTTCGCCCGGGCCGTTTTCGTCGCTCCCAAAACTTAAGTCCCGGAGAGACGTGATTGATTGGCTTGACTCCATTGTTTCAGGTATATACACCTCTCTCTCTTTTTCTCCTTCTCCATCTCCTTTCTCCCTTATTTTGATATCTTCTCTGTTAGATATTCAATTACGGAAGTCAGTGCAGCGTACTAGAGAATTTTCATGGTTAGGCTCTCCTTGGACATGCAGAAAAAGGCGCAGACATTTCCAGTCTTTTTGTAGGAATGGCATTGAAATCTCTGTTTACGATTTTGTTTATGTTCTTGCTGAGGAAGACCAACGACTTGTTGCTTACTTGGAAGATATGTACGAGGATTCTAGAGGCAGCAAAATGGTTGTGGTACGATGGTTTCACAAAATTGATGAGGTTGATATTGCTTTGCCTCACCATTTTAATGACAGGGAGATTTTCTTTTCTCTGTGTCTTCAAGATCTCAGTATTGAGTGCATAGATGGATTGGCTGTGGTCCTCAGTCCCCAGCATTTTGAGAAATTTTTGAGTGAGGCAATAAGCACTAAGTTGGAACCATATCTCTGCAGAAAACAATTTGACAATGATGATATCAAGCCTTTTGATATTACCCAAGTCAAAGGCTATTGGAAGCAGGAAATTCTTAGATATATGTATACTCTCCCCTCTCTTAAGCCCGATGGAGCTTCAGAGCAGTCTGATGGCGCTGATGATGAAGAAACTGAAAATACTTTATGTGTCAGAGCTAAAAGGAGGTGGCTTTTAAGTGACGATGACATGAACCATAACAGCAAAAAGTGGAAGGACAGAGCTTCTCATCAACTTCAATGTTTGAGTAGTAGTATGACGGATGATAAAGGTAGAACTGGAGCTTCTAATCAGAATGGAGGTGTTTCTGCCAGAATTTTGGCTAGGAAAGAGACACAACAAAAGTCTCCTCTTTATTTAGCGGTGGGTTCTCAAGTTGAGGTCCTTTCGCAAGACAGTGGGATTAGAGGGTGTTGGTTTAGAGCGAAAATTATCAAGAAGCACAAGGACAAAATGAAGATTCAATATCAAGATCTTCAGGATGCAGATGATGAATCTAACAAACTCGTGGAATGGATTTCTGCAACCAGAGTTGCTGCCCCAGATCACTTAGGTCTACGGTTTAGTCGGAGGCCTACTATTCGCCCACCTCTTCAGTCTAACAAAGGCATTGTAGCCTTAAAGCTTGGTATTGGGTCAGTAGTTGATGTGTGGTGGCACGATGGATGGTGGGAAGGCATTGTGGTCCAGAGAGAATCAGAAGACAAGCTTCAAGTGCATTTCCCAGGAGAAAAGAAAGAGTCAACTTTTGGGTTAAGTGATTTGAGGCTTTCTCGAGAATGGCTGGGAAGTGGGTGGATGGATATTAAGGAAAGGCCGGATATTGCTGTCACTCTTTCAACCGTGGAAAAACAAAAAGTTGGAGTCATTTGTGACACAAGCCAATCTAGAAAAGATGAATCTACATATAAAATTTCTTGCCTGGATGCTGGATGTGACAATAAAAAAGGGTTTTGTATGGTTCCTGATCTTTCAAAGGATAACTCGCTCAGTAAATTGAAGTGGAGTTCATCAAGAAAGCGAAGTCATATTAATGTGATCACTTTCCAGAAGCCACATTTTGACGTCAAGCGCAGTAGAAGCATTTTCTCATCCCGAACGAAGGAAAGCTTTTTTATTTCCACACCCTTGAAAGTTGATCATGAAAATTGCAAGCAAATTGAAGAGTTCCCATTTTGTTCTTCCGTCGTGGCTCCTCTAACAAGCTTGGTAATGTCCAGGTGA 2046 42.77 METLAQEVVTASPSDRTTTMFGFVAWEEVFVSSDKGRREVHYYLKREDGSSDLAVIGKERSLRHMSYGYAIRNRALVSPGPFSSLPKLKSRRDVIDWLDSIVSGIYTSLSFSPSPSPFSLILISSLLDIQLRKSVQRTREFSWLGSPWTCRKRRRHFQSFCRNGIEISVYDFVYVLAEEDQRLVAYLEDMYEDSRGSKMVVVRWFHKIDEVDIALPHHFNDREIFFSLCLQDLSIECIDGLAVVLSPQHFEKFLSEAISTKLEPYLCRKQFDNDDIKPFDITQVKGYWKQEILRYMYTLPSLKPDGASEQSDGADDEETENTLCVRAKRRWLLSDDDMNHNSKKWKDRASHQLQCLSSSMTDDKGRTGASNQNGGVSARILARKETQQKSPLYLAVGSQVEVLSQDSGIRGCWFRAKIIKKHKDKMKIQYQDLQDADDESNKLVEWISATRVAAPDHLGLRFSRRPTIRPPLQSNKGIVALKLGIGSVVDVWWHDGWWEGIVVQRESEDKLQVHFPGEKKESTFGLSDLRLSREWLGSGWMDIKERPDIAVTLSTVEKQKVGVICDTSQSRKDESTYKISCLDAGCDNKKGFCMVPDLSKDNSLSKLKWSSSRKRSHINVITFQKPHFDVKRSRSIFSSRTKESFFISTPLKVDHENCKQIEEFPFCSSVVAPLTSLVMSR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1532913 1536419 - Bma000330.1 Bma01g00164 74681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00164 681 Coils Coil 419 439 - -
Bma01g00164 681 MobiDBLite consensus disorder prediction 358 377 - -
Bma01g00164 681 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 15 680 - -
Bma01g00164 681 SMART agenet_At_2 481 537 IPR014002 -
Bma01g00164 681 SMART agenet_At_2 392 458 IPR014002 -
Bma01g00164 681 Pfam Agenet domain 397 470 IPR008395 -
Bma01g00164 681 SMART BAH_4 165 282 IPR001025 GO:0003682
Bma01g00164 681 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 15 680 - -
Bma01g00164 681 Pfam BAH domain 166 274 IPR001025 GO:0003682
Bma01g00164 681 Gene3D - 136 281 IPR043151 -
Bma01g00164 681 ProSiteProfiles BAH domain profile. 165 282 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00164 - - - qsu:112026445 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00164 Bma-Chr1:1532913 Bma01g01556 Bma-Chr1:35866395 7.25E-101 dispersed
Bma01g00164 Bma-Chr1:1532913 Bma14g00693 Bma-Chr14:7554472 1.97E-104 transposed
Bma01g00164 Bma-Chr1:1532913 Bma14g00175 Bma-Chr14:2310756 2.91E-104 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0454 Cone9ag0466 . . . . . . . . . . Bma01g00164 . . . . . . . . Cpe13g00412 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44