Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00172 CTGTTCTTGTGGTCAGAAAGAGAGACAGAAACACTGAACCGGGCCCGTCAGCTCGTCTTCAGTAACGATAACATAGCTCCTCAACCACCTTCTCTTCTCGGCAGTTGTTGTCATCCTGTCACACCTGGAAGCTACCATTCAGCTACTGGAATCGGAGATCCGGGCTCAATGCCTTTCCGATTTCCGACGACTAGAATGTTCTCCGGAACTTCATCGTCCACTCTTTTACCGCAGCAACCTCATCCTCCGCCGTTGCCTCATCAGCCATATTTATACACATCACCCTCGCGACCTACTTCATTTTTAGCTCACTACCCGCCTCAACATTCAGTCAACGATTACTTCGTCGGACATCTTTTCGGAAATGCGTCGCAGTACAATCACCAGAACGTGAGTTTATCGCCAGGATCAATGGAGTCTTCTAGTTATACATGCATCGGAGCACCTGTGGGGCACGGGTTCGCGGGGGCGGCGGCAGGGAGGATGAGTGATGTATTGGGAGGAGGTGGTAGAGACGGGTCAGCGAGTAATCAGGATGAAGGGTTTAATTGGAATCGGCGCTATGCAGGATCACAACAGCAGCGTTTGGACGTTCCTTCGTTCAATCGGTTTCAAGATGGGTTCTAA 627 50.72 LFLWSERETETLNRARQLVFSNDNIAPQPPSLLGSCCHPVTPGSYHSATGIGDPGSMPFRFPTTRMFSGTSSSTLLPQQPHPPPLPHQPYLYTSPSRPTSFLAHYPPQHSVNDYFVGHLFGNASQYNHQNVSLSPGSMESSSYTCIGAPVGHGFAGAAAGRMSDVLGGGGRDGSASNQDEGFNWNRRYAGSQQQRLDVPSFNRFQDGF 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1596047 1596853 + Bma000336.1 Bma01g00172 74689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00172 208 PANTHER ZINC FINGER PROTEIN JAGGED 6 178 IPR045320 GO:0003700
Bma01g00172 208 PANTHER ZINC FINGER PROTEIN JAGGED 6 178 IPR031113 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00172 - - - qsu:111996161 217.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00172 Bma06g00754 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00172 Bma-Chr1:1596047 Bma06g00754 Bma-Chr6:39135085 9.19E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g315 Blo01g00498 Blo16g01066 Bda01g02073 Bda11g01152 Bpe13g01351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01152 . Bpe02g02264 Bma01g00172 Bma06g00754 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01492 . Cme09g00797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006915 2 1 2 3 2 1 2 1 1 0 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 2 0 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00172 Bma_Chr01 FPKM 1.354029 0.594735 0.971511 0.335014 0.95336 0.729829 1.36311 0.848975 1.035534 1.507251