Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00173 ATGTCGCTCTTAAACCAACTATTCAACAGAGGTGTTTTTGGAGCAAAATGCAAAACGTGCTTGTCTTTGGCAATCTCACGCATCAAATTGCTGCAAAACAAGAGAGATTTGCATCTGAAACAAATGCGCAAAGAGATAGCACAATTCCTTCAGGCTGGCCAAGAAGCTATAGCTCGGATCCGTGTGGAGCATGTTATACGTGAACAAAACATGTGGGCTGCTTATGAGATTTTAGAACTATTTTGCGAATTTGTTCTTGCAAGAGTTCCTATTATTGAAAGTCAAAGAGAATGCCCAACAGAATTAAGAGAAGCCGTTTCAAGCATTATATTTGCTGCTCCTAGATGTTCGGATCTTCCAGATTTATTGCAGTTGAAGAATATGTTCACTACAAAATATGGAAAAGAATTTGTTTCTGCTGTGTCCGAGCTTCGTCCTGATTCTGGTGTCAACCGTACTATAATCGAAAAGCTTTCAGTTATTGCGCCACCTGGACATATAAAGCTAAAGGTATTAAAGGAAATAGCTGTGGAGTACAAAGTGAATTGGGATTCTTCCGATGCTGAAGCAGAATTCAGTAAAACACATGAGGATCTTCTGGGTGGACCAAAGGACATACGGGGATCATCTCTTTCTCATGCTCCCATCAGGAAGGACTCACTCAAATCTTCTACTTCCAATGGAGCTGATCGAATCGAACCAGTAGACGATAAACAAGCTTACGCAAGGCCCATTAGCGAAAAACCTTCATCAACTACAAAAGAAATCGAACCTATATTTAAAGATGAAGTTACAGGAAAAATAAACGATGTGAAAAGAGATGTAAGACCACAGTCATCTGATGTCCTAGAAAGAGCTCGAGCAGCCATCGCCTCTGCCGAACGGGCAGCTGCTGCCGCCCGTGCTGCAGCCGGGCTTGTGAACACCGAGGGAGGAAGGTCTGTCTTAAAATGA 954 42.35 MSLLNQLFNRGVFGAKCKTCLSLAISRIKLLQNKRDLHLKQMRKEIAQFLQAGQEAIARIRVEHVIREQNMWAAYEILELFCEFVLARVPIIESQRECPTELREAVSSIIFAAPRCSDLPDLLQLKNMFTTKYGKEFVSAVSELRPDSGVNRTIIEKLSVIAPPGHIKLKVLKEIAVEYKVNWDSSDAEAEFSKTHEDLLGGPKDIRGSSLSHAPIRKDSLKSSTSNGADRIEPVDDKQAYARPISEKPSSTTKEIEPIFKDEVTGKINDVKRDVRPQSSDVLERARAAIASAERAAAAARAAAGLVNTEGGRSVLK 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1608549 1612686 - Bma000338.1 Bma01g00173 74690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00173 317 Pfam Regulator of Vps4 activity in the MVB pathway 18 182 IPR005061 GO:0015031
Bma01g00173 317 MobiDBLite consensus disorder prediction 216 230 - -
Bma01g00173 317 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 15 308 - -
Bma01g00173 317 Coils Coil 283 303 - -
Bma01g00173 317 Gene3D - 9 190 IPR042277 -
Bma01g00173 317 PANTHER IST1 FAMILY MEMBER 15 308 IPR005061 GO:0015031
Bma01g00173 317 MobiDBLite consensus disorder prediction 194 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00173 - - - qsu:112021724 405.216
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00173 Bma11g00511 CCT
Bma01g00173 Bma11g00511 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00173 Bma-Chr1:1608549 Bma04g00389 Bma-Chr4:3190077 7.11E-91 dispersed
Bma15g00084 Bma-Chr15:941187 Bma01g00173 Bma-Chr1:1608549 1.06E-46 transposed
Bma01g00173 Bma-Chr1:1608549 Bma11g00511 Bma-Chr11:6333583 8.80E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g316 . . . . . . . . . . . . . . . . Cpe01g01794 . . . . . . . . . . . . . . . . . . . . . Cme10g01545 . . . . . Bpe02g02263 Bma01g00173 . . Cmo04g02154 . Cma04g02057 . Car04g01997 . . . . . . . . . . . . . . . . . . Csa05g01489 . .
Vvi11g351 . . . . Bpe01g00526 Bpe02g02263 . Bma11g00511 Cmo10g00648 Cmo11g00608 . . . . Sed08g0753 Cpe04g01136 Cpe18g00440 Bhi02g01121 Tan09g1297 Cmetu01g1077 . Hepe09g0751 . . . . . . . . . . Cone16ag0689 Cone4ag0724 . Lsi06g00882 . . Cme02g01344 Blo08g00286 Blo14g00488 . Bda09g01157 . . Bma01g00173 . . . . Cma10g00608 Cma11g00604 Car10g00564 Car11g00482 . . . . . . . . . Cla06g00841 Cam06g0907 Cec06g0915 Cco06g0944 Clacu06g0908 Cmu06g0874 Cre06g1657 . Csa01g02042 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011875 1 1 0 1 1 1 1 1 2 1 2 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00173 Bma_Chr01 FPKM 9.134291 12.851823 15.826482 18.416803 10.150952 9.930708 12.146801 19.367542 18.710913 21.208944