Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00187 | CGACCGTCACCGGCCCCGAGGTCTCCTCCCGGGAATGAGACCTCTCCTCCCCCCACCGGTGATGTACGTCTCCGCCACCCACCTCTTCTACGCCCCCTCCGCCTGCCTTCTTCTCCTCCTCCAACGACTCCAACGGCACCGCCTCCCGAAACTGCATCACCTCCGGCTCCGACAACGTCTTCTCCACCTCCACCGTCTTCTAGAGCCTCTCCTCCTCCTCCGCGGTCTACTAGCAACTCGACATCAAGACCGCCGCCTCCGACTTCTGGCTCTAGGAGTACTCCACCGCCGCCGATGACTTCAACGCCACCAGCGTTATCTCCCTCCTCGTCAGGGATTTCTACAGGAATTGTGGTTGGAATAGCCATAGGAGGGGTAATTGTTCTCGTAATGTTAAGTATTTTATGTCTCTGTTTCAGAAAGAAGACTAAGAAGAGGCGTCACGAAGATGATTACTATGCAAGACCTCCGACTGGGCCTAAAGATGAGCCTTATGGTGGTCTTCCCCAACAATGGCGACATAATATTCCACCATCTGACCCTGTAGTTGGTGTGGCATCTAAGCCATCTACTCCTCCAGCATATGCCTCTCGGCCACCTCACTCACCTCCGCCACCCCATTTTATGAGCAGCAGTGGAGGTTCTGCCTCCAACTACTCCGGCTCAGAAAATCCTGTTCTTCCACCGCCTCCTCCGCCTAGCTATGCCTTGGGTTTCTCAAAGAGTAGTTTTACCTACGAAGAATTGGCAATGGCGACAGATGGTTTCTCAGAAGCCAATCTCCTCGGACAAGGCGGGTTCGGCTATGTTCATAGAGGAGTCCTTCCAAATGGAAAGGAAGTTGCAGTGAAGCAGCTGAAAGCTGGAAGTGGGCAGGGAGAGCGAGAATTCCGAGCTGAAGTTGAGATTATCAGCAGAGTTCATCATAAACATCTTGTTTCCTTGGTCGGATATTGCATTACTGGGTCCCAGCGATTACTTGTCTATGAATTTGTTCCAAACTATACTTTGGAATTCCATTTACACGGGAGTGGACGGCCTACGATGGAATGGCCGATGAGACTGAAAATCGCGCTAGGATCTGCAAAAGGACTGGCATACCTTCACGAGGATTGTAAGCATTTGATTGTGGTATCGTTTATTTTCTCATCGTATGATTTGTGCGTTAGTTTGACGAACATTGAACTCGTGTACGTAGGTCATCCGAAAATCATTCATCGTGACATCAAAGCTTCCAATATTTTGTTGGAATTCAAGTTCGAGGCTAAGGTAGTCGCCGACTTTGGACTTGCAAAGTTGTCTTCCGATGTCAATACCCATGTATCGACTCGTGTGATGGGAACTTTTGGATATCTGGCTCCAGAATACGCATCGAGTGGGAAACTTACCGAGAAATCAGATGTTTTCTCCTTCGGTGTTATGCTTTTGGAGCTAATCACCGGCCGAAGACCTGTAGATGCGACGGAGGCATTCATGGAGGATAGTTTAGTAGATTGGGCGAGGCCTTTACTTAATCGAGCGTTGGAAGATGGAATCCTCGATACTTTGGTTGATCCAAAGCTGCAAAATAATTACAACCATAATGAAATGTCTCGAATGGTTGCCTGCGCAGCTGCTTCGGTTCGTCATTCCGCTAGGCGACGACCTCGGATGAGCCAGGTAGTTCGAGCTCTAGAAGGAGACGCCTCTCTCTCCGATTTAAACGAAAGAATCAGGCTTGGACAGAGCTCACTTTTCAGCTCCCATGGAAGCTCAGATTATGACACCAACCGATACAACGAAGACTTAAAAAGGTTCAGGAAAATGGCGTTGGGTAGCCAGGAGTACGGAGCCAGTAGTGAATACAGTGGACAAACCAGTGAGTACGGCTTGAACCCATCTGGCTCGAGCAGCGGCGAGGGCCAAAACAACCGAGAAATGGAGATGGGGCAAGTGAAGAAAGAAGGTCAGGGCTCCCATGAAAGCTCTTGA | 1971 | 49.87 | RPSPAPRSPPGNETSPPPTGDVRLRHPPLLRPLRLPSSPPPTTPTAPPPETASPPAPTTSSPPPPSSRASPPPPRSTSNSTSRPPPPTSGSRSTPPPPMTSTPPALSPSSSGISTGIVVGIAIGGVIVLVMLSILCLCFRKKTKKRRHEDDYYARPPTGPKDEPYGGLPQQWRHNIPPSDPVVGVASKPSTPPAYASRPPHSPPPPHFMSSSGGSASNYSGSENPVLPPPPPPSYALGFSKSSFTYEELAMATDGFSEANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFRAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNYTLEFHLHGSGRPTMEWPMRLKIALGSAKGLAYLHEDCKHLIVVSFIFSSYDLCVSLTNIELVYVGHPKIIHRDIKASNILLEFKFEAKVVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDATEAFMEDSLVDWARPLLNRALEDGILDTLVDPKLQNNYNHNEMSRMVACAAASVRHSARRRPRMSQVVRALEGDASLSDLNERIRLGQSSLFSSHGSSDYDTNRYNEDLKRFRKMALGSQEYGASSEYSGQTSEYGLNPSGSSSGEGQNNREMEMGQVKKEGQGSHESS | 656 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1684343 | 1687286 | + | Bma000353.1 | Bma01g00187 | 74704 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 609 | 638 | - | - | |
Bma01g00187 | 656 | SUPERFAMILY | Protein kinase-like (PK-like) | 232 | 558 | IPR011009 | - | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 145 | 234 | - | - | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 88 | 104 | - | - | |
Bma01g00187 | 656 | SMART | serkin_6 | 256 | 534 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 208 | 223 | - | - | |
Bma01g00187 | 656 | Gene3D | Transferase(Phosphotransferase) domain 1 | 332 | 572 | - | - | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 193 | 207 | - | - | |
Bma01g00187 | 656 | ProSitePatterns | Protein kinases ATP-binding region signature. | 262 | 284 | IPR017441 | GO:0005524 | |
Bma01g00187 | 656 | ProSiteProfiles | Protein kinase domain profile. | 256 | 564 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 640 | 656 | - | - | |
Bma01g00187 | 656 | Pfam | Protein kinase domain | 398 | 487 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma01g00187 | 656 | Gene3D | Phosphorylase Kinase; domain 1 | 235 | 331 | - | - | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Bma01g00187 | 656 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 7 | 377 | - | - | |
Bma01g00187 | 656 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 400 | 638 | - | - | |
Bma01g00187 | 656 | Pfam | Protein tyrosine and serine/threonine kinase | 260 | 370 | IPR001245 | GO:0004672|GO:0006468 | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 607 | 656 | - | - | |
Bma01g00187 | 656 | MobiDBLite | consensus disorder prediction | 32 | 81 | - | - | |
Bma01g00187 | 656 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 7 | 377 | - | - | |
Bma01g00187 | 656 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 400 | 638 | - | - | |
Bma01g00187 | 656 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 404 | 416 | IPR008271 | GO:0004672|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g00187 | Bma07g00491 | CCT | |
Bma01g00187 | Bma11g00518 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00187 | Bma-Chr1:1684343 | Bma06g00792 | Bma-Chr6:40568896 | 0 | dispersed | |
Bma01g00187 | Bma-Chr1:1684343 | Bma11g00518 | Bma-Chr11:6483183 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66243 | PF00069 | Pkinase | 3.90E-20 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00187 | - | - | zju:107431789 | 739.184 |