Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00187 CGACCGTCACCGGCCCCGAGGTCTCCTCCCGGGAATGAGACCTCTCCTCCCCCCACCGGTGATGTACGTCTCCGCCACCCACCTCTTCTACGCCCCCTCCGCCTGCCTTCTTCTCCTCCTCCAACGACTCCAACGGCACCGCCTCCCGAAACTGCATCACCTCCGGCTCCGACAACGTCTTCTCCACCTCCACCGTCTTCTAGAGCCTCTCCTCCTCCTCCGCGGTCTACTAGCAACTCGACATCAAGACCGCCGCCTCCGACTTCTGGCTCTAGGAGTACTCCACCGCCGCCGATGACTTCAACGCCACCAGCGTTATCTCCCTCCTCGTCAGGGATTTCTACAGGAATTGTGGTTGGAATAGCCATAGGAGGGGTAATTGTTCTCGTAATGTTAAGTATTTTATGTCTCTGTTTCAGAAAGAAGACTAAGAAGAGGCGTCACGAAGATGATTACTATGCAAGACCTCCGACTGGGCCTAAAGATGAGCCTTATGGTGGTCTTCCCCAACAATGGCGACATAATATTCCACCATCTGACCCTGTAGTTGGTGTGGCATCTAAGCCATCTACTCCTCCAGCATATGCCTCTCGGCCACCTCACTCACCTCCGCCACCCCATTTTATGAGCAGCAGTGGAGGTTCTGCCTCCAACTACTCCGGCTCAGAAAATCCTGTTCTTCCACCGCCTCCTCCGCCTAGCTATGCCTTGGGTTTCTCAAAGAGTAGTTTTACCTACGAAGAATTGGCAATGGCGACAGATGGTTTCTCAGAAGCCAATCTCCTCGGACAAGGCGGGTTCGGCTATGTTCATAGAGGAGTCCTTCCAAATGGAAAGGAAGTTGCAGTGAAGCAGCTGAAAGCTGGAAGTGGGCAGGGAGAGCGAGAATTCCGAGCTGAAGTTGAGATTATCAGCAGAGTTCATCATAAACATCTTGTTTCCTTGGTCGGATATTGCATTACTGGGTCCCAGCGATTACTTGTCTATGAATTTGTTCCAAACTATACTTTGGAATTCCATTTACACGGGAGTGGACGGCCTACGATGGAATGGCCGATGAGACTGAAAATCGCGCTAGGATCTGCAAAAGGACTGGCATACCTTCACGAGGATTGTAAGCATTTGATTGTGGTATCGTTTATTTTCTCATCGTATGATTTGTGCGTTAGTTTGACGAACATTGAACTCGTGTACGTAGGTCATCCGAAAATCATTCATCGTGACATCAAAGCTTCCAATATTTTGTTGGAATTCAAGTTCGAGGCTAAGGTAGTCGCCGACTTTGGACTTGCAAAGTTGTCTTCCGATGTCAATACCCATGTATCGACTCGTGTGATGGGAACTTTTGGATATCTGGCTCCAGAATACGCATCGAGTGGGAAACTTACCGAGAAATCAGATGTTTTCTCCTTCGGTGTTATGCTTTTGGAGCTAATCACCGGCCGAAGACCTGTAGATGCGACGGAGGCATTCATGGAGGATAGTTTAGTAGATTGGGCGAGGCCTTTACTTAATCGAGCGTTGGAAGATGGAATCCTCGATACTTTGGTTGATCCAAAGCTGCAAAATAATTACAACCATAATGAAATGTCTCGAATGGTTGCCTGCGCAGCTGCTTCGGTTCGTCATTCCGCTAGGCGACGACCTCGGATGAGCCAGGTAGTTCGAGCTCTAGAAGGAGACGCCTCTCTCTCCGATTTAAACGAAAGAATCAGGCTTGGACAGAGCTCACTTTTCAGCTCCCATGGAAGCTCAGATTATGACACCAACCGATACAACGAAGACTTAAAAAGGTTCAGGAAAATGGCGTTGGGTAGCCAGGAGTACGGAGCCAGTAGTGAATACAGTGGACAAACCAGTGAGTACGGCTTGAACCCATCTGGCTCGAGCAGCGGCGAGGGCCAAAACAACCGAGAAATGGAGATGGGGCAAGTGAAGAAAGAAGGTCAGGGCTCCCATGAAAGCTCTTGA 1971 49.87 RPSPAPRSPPGNETSPPPTGDVRLRHPPLLRPLRLPSSPPPTTPTAPPPETASPPAPTTSSPPPPSSRASPPPPRSTSNSTSRPPPPTSGSRSTPPPPMTSTPPALSPSSSGISTGIVVGIAIGGVIVLVMLSILCLCFRKKTKKRRHEDDYYARPPTGPKDEPYGGLPQQWRHNIPPSDPVVGVASKPSTPPAYASRPPHSPPPPHFMSSSGGSASNYSGSENPVLPPPPPPSYALGFSKSSFTYEELAMATDGFSEANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFRAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNYTLEFHLHGSGRPTMEWPMRLKIALGSAKGLAYLHEDCKHLIVVSFIFSSYDLCVSLTNIELVYVGHPKIIHRDIKASNILLEFKFEAKVVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDATEAFMEDSLVDWARPLLNRALEDGILDTLVDPKLQNNYNHNEMSRMVACAAASVRHSARRRPRMSQVVRALEGDASLSDLNERIRLGQSSLFSSHGSSDYDTNRYNEDLKRFRKMALGSQEYGASSEYSGQTSEYGLNPSGSSSGEGQNNREMEMGQVKKEGQGSHESS 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1684343 1687286 + Bma000353.1 Bma01g00187 74704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00187 656 MobiDBLite consensus disorder prediction 609 638 - -
Bma01g00187 656 SUPERFAMILY Protein kinase-like (PK-like) 232 558 IPR011009 -
Bma01g00187 656 MobiDBLite consensus disorder prediction 145 234 - -
Bma01g00187 656 MobiDBLite consensus disorder prediction 1 110 - -
Bma01g00187 656 MobiDBLite consensus disorder prediction 88 104 - -
Bma01g00187 656 SMART serkin_6 256 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00187 656 MobiDBLite consensus disorder prediction 208 223 - -
Bma01g00187 656 Gene3D Transferase(Phosphotransferase) domain 1 332 572 - -
Bma01g00187 656 MobiDBLite consensus disorder prediction 193 207 - -
Bma01g00187 656 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Bma01g00187 656 ProSiteProfiles Protein kinase domain profile. 256 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00187 656 MobiDBLite consensus disorder prediction 640 656 - -
Bma01g00187 656 Pfam Protein kinase domain 398 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00187 656 Gene3D Phosphorylase Kinase; domain 1 235 331 - -
Bma01g00187 656 MobiDBLite consensus disorder prediction 1 16 - -
Bma01g00187 656 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 7 377 - -
Bma01g00187 656 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 400 638 - -
Bma01g00187 656 Pfam Protein tyrosine and serine/threonine kinase 260 370 IPR001245 GO:0004672|GO:0006468
Bma01g00187 656 MobiDBLite consensus disorder prediction 607 656 - -
Bma01g00187 656 MobiDBLite consensus disorder prediction 32 81 - -
Bma01g00187 656 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 377 - -
Bma01g00187 656 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 400 638 - -
Bma01g00187 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00187 Bma07g00491 CCT
Bma01g00187 Bma11g00518 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00187 Bma-Chr1:1684343 Bma06g00792 Bma-Chr6:40568896 0 dispersed
Bma01g00187 Bma-Chr1:1684343 Bma11g00518 Bma-Chr11:6483183 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66243 PF00069 Pkinase 3.90E-20 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00187 - - zju:107431789 739.184