Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00192 ATGGGTGAAGGAGAGGCGGCTGATTCAGTTCAAGAAAAGACTCAGCCAGACGGTGCGACATGCAGTGACGCTGCTTCGTCAGAAGTACCGGCTAAAAAGCTCGCGAGGCAGCTGGACTTTACGGGCTTTGGGAGGATGTCCGCGAGTGTGGTCTTGCCTGATCATCCTCAGCCTCAATCTCAGGTACAGTTGCAGTCACGTTCTCAGTTGCCAGCTGTGGTGGCACCTGCGCCCCCGAGCCAGCCTCAGTTGCAGCCGCCTCAAAAACCAGACTCCCCAAAGTCAAGGCCACGATCCAACGTTGAAGTAAAAGATTGTACTCCAAAGAAGCAAAAACAATGTAATTGTAAACACTCACGGTGCTTAAAGTTGTATTGTGAGTGTTTTGCATCTGGAATATATTGCGATGGTTGTAACTGCATTAACTGCTATAATAATGTTGAAAATGAAGCTGCTAGGCGTGAAGCAGTTGAATCCACTTTGGAGCGTAATCGAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCACACGGGGCACGTGATATTAGGGAAGAAGCTGGAGAGGTTCTAATGTTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGGTGCCTAAAAAAGTACTGCGAGTGTTTTCAGGCCAACATTCTCTGCTCTGACAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGGCAAGCTCTATTCCATGGGGACCATGGAAATAACATTGCATATATACAGCAGGCAGCTAATGCTGCTATAACTGGAGCTATTGGATCCTCGGGATATGCTTCCCCTCCGGTGTCAAAGAAACGGAAAGGAAATGAGCTTTTCTTTGGGCCAACGCCCAAAGATTCGTCCATTAATAGGCTGGCACAATTTCAACAGGCAAATCAGATTAGAACTTCTGCGGCCTCCTTGCCTTCAATCCCTGTTACTCGAGCTGGTTCCAATGCAGCATTGGCCCCCTCAAAGTGCACTTACAGATCATTATTAGCAGACATAATCCAACCACAGGATTCGATGGAGCTCTGCTCTGTATTAGTTGTTCTGTCAAATCAAAGAAATGCTACAGAAGAGGGGGCTGACAATCAAATAGAAACTCGCCTTGCTTCCGCAACTCTTGAGAGGCTGCAGAGTCAAAAGGAATCCGTGGAGAAAGCTGTAGAAGACGATTGTTCTAGTGCTAATCAGGCTCATAAAATCAGCCCTGATAATTCAAGTTCAGACGGAGAAGATGTACCTAAAGGTAGGCCCATGTCTCCGGGAACTTTAGCTTTGATGTGCAATGAAGAAGACACAATGTTTATAGCATCTGCTTCACCCAATGGGATAATGGGGCATGGATGCACTGCATCATCGCAATTGTCGTGTGGACAAGACATGTCGGAAATCTATGCAGAGCAGGAACGGATAATCTTGACAACATTTCGTGATTGTCTTAATAAGCTCATAACTTTTGGCGAGATAAAAGGCAAGCTATTTCTTTTTTCCTTCCTCCGGTGA 1527 45.91 MGEGEAADSVQEKTQPDGATCSDAASSEVPAKKLARQLDFTGFGRMSASVVLPDHPQPQSQVQLQSRSQLPAVVAPAPPSQPQLQPPQKPDSPKSRPRSNVEVKDCTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVESTLERNRNAFRPKIASSPHGARDIREEAGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFEGSEERQALFHGDHGNNIAYIQQAANAAITGAIGSSGYASPPVSKKRKGNELFFGPTPKDSSINRLAQFQQANQIRTSAASLPSIPVTRAGSNAALAPSKCTYRSLLADIIQPQDSMELCSVLVVLSNQRNATEEGADNQIETRLASATLERLQSQKESVEKAVEDDCSSANQAHKISPDNSSSDGEDVPKGRPMSPGTLALMCNEEDTMFIASASPNGIMGHGCTASSQLSCGQDMSEIYAEQERIILTTFRDCLNKLITFGEIKGKLFLFSFLR 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1702579 1706534 - Bma000358.1 Bma01g00192 74709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00192 508 MobiDBLite consensus disorder prediction 388 430 - -
Bma01g00192 508 MobiDBLite consensus disorder prediction 75 93 - -
Bma01g00192 508 ProSiteProfiles CRC domain profile. 110 234 IPR005172 -
Bma01g00192 508 MobiDBLite consensus disorder prediction 403 417 - -
Bma01g00192 508 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 86 499 - -
Bma01g00192 508 SMART CXC_2 194 235 IPR033467 -
Bma01g00192 508 SMART CXC_2 109 149 IPR033467 -
Bma01g00192 508 MobiDBLite consensus disorder prediction 53 70 - -
Bma01g00192 508 PANTHER TESMIN/TSO1-RELATED 25 85 IPR028307 -
Bma01g00192 508 MobiDBLite consensus disorder prediction 49 104 - -
Bma01g00192 508 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 197 231 IPR005172 -
Bma01g00192 508 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 111 146 IPR005172 -
Bma01g00192 508 MobiDBLite consensus disorder prediction 1 31 - -
Bma01g00192 508 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 25 85 - -
Bma01g00192 508 PANTHER TESMIN/TSO1-RELATED 86 499 IPR028307 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00192 Bma-Chr1:1702579 Bma06g01566 Bma-Chr6:51941487 1.17E-22 dispersed
Bma01g00192 Bma-Chr1:1702579 Bma04g00774 Bma-Chr4:8460429 1.38E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56613 PF03638 TCR 2.40E-12 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00192 - - zju:107431760 691.419