Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g00198 | GTTTTTAATTTCTGCCTCCACTTACCTGCAATGTTCAGCTCAGCTACTGAGTCAAGTACCACCCACTCGTCTTCCTCCCCTAGCTCTTCTTCTTCTTCTTCAGGACCCGACCTGAAGAAGAGTAAGCGAACCCGAGATAGTAACGGTAAACACCCGGTTTACAGAGGGGTCCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGAGAACCCAGAAAGAAGAGCCGGATTTGGCTCGGAACTTTTTCGACGCCGGAAATGGCGGCCAGGGCTCATGACGTCGCTGCTTTAACCATCAAGGGGAAATCGGCGATCCTCAACTTTCCAGAAATGGCAGGAATACTTCCTCGGCCGTCTTCGAACTCTCCCCGTGACATTCAAGCCGCCGCTGCTCTGGCCGCTTCAACGGAGGTTCTTCCGGCGACTCCTCCAGAATCGTCACATCCCCCGCCGTCTGAACCGTCATCTTCATCATCCTCATTCAACGTTCCATCCCCGGAGGAACTTAGTGAGATAGTACAACTTCCGAGTTTAGGAACGAGCTATGAATCGCCGGCGTCGCAATTCGTGCTCCATGATTCAGAAGATCGGTGGCTTTACACAGAGAATTACGAGTACTTCAGCGATCAGATATCAATGGCGGAGACAGAAAGCTTCGATTTTTTCTTCCGACGTCATTAA | 684 | 51.32 | VFNFCLHLPAMFSSATESSTTHSSSSPSSSSSSSGPDLKKSKRTRDSNGKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKSAILNFPEMAGILPRPSSNSPRDIQAAAALAASTEVLPATPPESSHPPPSEPSSSSSSFNVPSPEELSEIVQLPSLGTSYESPASQFVLHDSEDRWLYTENYEYFSDQISMAETESFDFFFRRH | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1736158 | 1736841 | + | Bma000364.1 | Bma01g00198 | 74715 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g00198 | 227 | MobiDBLite | consensus disorder prediction | 38 | 53 | - | - | |
Bma01g00198 | 227 | MobiDBLite | consensus disorder prediction | 16 | 37 | - | - | |
Bma01g00198 | 227 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 16 | 210 | - | - | |
Bma01g00198 | 227 | MobiDBLite | consensus disorder prediction | 153 | 167 | - | - | |
Bma01g00198 | 227 | SUPERFAMILY | DNA-binding domain | 53 | 110 | IPR016177 | GO:0003677 | |
Bma01g00198 | 227 | MobiDBLite | consensus disorder prediction | 139 | 167 | - | - | |
Bma01g00198 | 227 | ProSiteProfiles | AP2/ERF domain profile. | 53 | 110 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00198 | 227 | SMART | rav1_2 | 53 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00198 | 227 | CDD | AP2 | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00198 | 227 | MobiDBLite | consensus disorder prediction | 16 | 53 | - | - | |
Bma01g00198 | 227 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 16 | 210 | - | - | |
Bma01g00198 | 227 | Gene3D | AP2/ERF domain | 53 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Bma01g00198 | 227 | Pfam | AP2 domain | 52 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00198 | 227 | PRINTS | Ethylene responsive element binding protein signature | 76 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
Bma01g00198 | 227 | PRINTS | Ethylene responsive element binding protein signature | 54 | 65 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00198 | Bma-Chr1:1736158 | Bma13g00916 | Bma-Chr13:39582644 | 6.01E-63 | dispersed | |
Bma13g00765 | Bma-Chr13:26465584 | Bma01g00198 | Bma-Chr1:1736158 | 2.58E-47 | dispersed | |
Bma15g00586 | Bma-Chr15:7347116 | Bma01g00198 | Bma-Chr1:1736158 | 3.05E-41 | dispersed | |
Bma01g00198 | Bma-Chr1:1736158 | Bma01g00199 | Bma-Chr1:1748357 | 2.42E-103 | tandem | |
Bma01g00198 | Bma-Chr1:1736158 | Bma11g00534 | Bma-Chr11:6799293 | 5.97E-64 | wgd | |
Bma01g00198 | Bma-Chr1:1736158 | Bma06g00819 | Bma-Chr6:41823166 | 3.19E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56614 | PF00847 | AP2 | 9.50E-14 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g00198 | K09286 | - | tcc:18588535 | 225.328 |