Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00198 GTTTTTAATTTCTGCCTCCACTTACCTGCAATGTTCAGCTCAGCTACTGAGTCAAGTACCACCCACTCGTCTTCCTCCCCTAGCTCTTCTTCTTCTTCTTCAGGACCCGACCTGAAGAAGAGTAAGCGAACCCGAGATAGTAACGGTAAACACCCGGTTTACAGAGGGGTCCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATCCGAGAACCCAGAAAGAAGAGCCGGATTTGGCTCGGAACTTTTTCGACGCCGGAAATGGCGGCCAGGGCTCATGACGTCGCTGCTTTAACCATCAAGGGGAAATCGGCGATCCTCAACTTTCCAGAAATGGCAGGAATACTTCCTCGGCCGTCTTCGAACTCTCCCCGTGACATTCAAGCCGCCGCTGCTCTGGCCGCTTCAACGGAGGTTCTTCCGGCGACTCCTCCAGAATCGTCACATCCCCCGCCGTCTGAACCGTCATCTTCATCATCCTCATTCAACGTTCCATCCCCGGAGGAACTTAGTGAGATAGTACAACTTCCGAGTTTAGGAACGAGCTATGAATCGCCGGCGTCGCAATTCGTGCTCCATGATTCAGAAGATCGGTGGCTTTACACAGAGAATTACGAGTACTTCAGCGATCAGATATCAATGGCGGAGACAGAAAGCTTCGATTTTTTCTTCCGACGTCATTAA 684 51.32 VFNFCLHLPAMFSSATESSTTHSSSSPSSSSSSSGPDLKKSKRTRDSNGKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGKSAILNFPEMAGILPRPSSNSPRDIQAAAALAASTEVLPATPPESSHPPPSEPSSSSSSFNVPSPEELSEIVQLPSLGTSYESPASQFVLHDSEDRWLYTENYEYFSDQISMAETESFDFFFRRH 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1736158 1736841 + Bma000364.1 Bma01g00198 74715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00198 227 MobiDBLite consensus disorder prediction 38 53 - -
Bma01g00198 227 MobiDBLite consensus disorder prediction 16 37 - -
Bma01g00198 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 210 - -
Bma01g00198 227 MobiDBLite consensus disorder prediction 153 167 - -
Bma01g00198 227 SUPERFAMILY DNA-binding domain 53 110 IPR016177 GO:0003677
Bma01g00198 227 MobiDBLite consensus disorder prediction 139 167 - -
Bma01g00198 227 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Bma01g00198 227 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Bma01g00198 227 CDD AP2 54 111 IPR001471 GO:0003700|GO:0006355
Bma01g00198 227 MobiDBLite consensus disorder prediction 16 53 - -
Bma01g00198 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 16 210 - -
Bma01g00198 227 Gene3D AP2/ERF domain 53 112 IPR036955 GO:0003700|GO:0006355
Bma01g00198 227 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Bma01g00198 227 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Bma01g00198 227 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00198 Bma-Chr1:1736158 Bma13g00916 Bma-Chr13:39582644 6.01E-63 dispersed
Bma13g00765 Bma-Chr13:26465584 Bma01g00198 Bma-Chr1:1736158 2.58E-47 dispersed
Bma15g00586 Bma-Chr15:7347116 Bma01g00198 Bma-Chr1:1736158 3.05E-41 dispersed
Bma01g00198 Bma-Chr1:1736158 Bma01g00199 Bma-Chr1:1748357 2.42E-103 tandem
Bma01g00198 Bma-Chr1:1736158 Bma11g00534 Bma-Chr11:6799293 5.97E-64 wgd
Bma01g00198 Bma-Chr1:1736158 Bma06g00819 Bma-Chr6:41823166 3.19E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56614 PF00847 AP2 9.50E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00198 K09286 - tcc:18588535 225.328