Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00199 TTACCTGCAATGGCCGACGCGTTCAAGTCAGCTACTGAGTCAAGTACCACCAACTCGTCTTCCGACCCGAATAAGAGTAAACGAACCCGAAATAGTGAAGGTAAACACCCGGTTTACAAAGGGGTCCGAATGCGGGCTTGGGGAAAATGGGTATCCGAAATTCGAGAACCCAGAAAGAAGAGCCGGATTTGGCTCGGAAGTTTCTCGACGCCGGAAATGGCGGCCAGGGCTCACGACGTCGCCGCTTTAACCATCAAAGGCAAATCGGCGATCCTCAACTTTCCGGAGATGGCCGGAATACTTCCTCGGCCGTCTTCGAACTCTCCACGTGACGTTCAAGCCGCCGCTGCTCTGGCCGCTTCAATGGAGGTTCTTCCGGCGACTCCTCCAGAATCGTCCCATCCTCCGCCGTCCGAACAGTCATCTTCATCCTCCTCATTTGACGTTCCGTATCCGAAGGAGCTAAGCGAGATAGTACAACTTCCGAGTTTAGGAACGAGCTACGAATTGCCAGAGTCGCAATTCGTGGTCCATGACTCAGAAGATCGGTGGCTTTACACAGAGAATTACGAGTACGTCAGCGATCAGATATCAATGGCGGAGATAGAAAGCTTTGATATTTTCTCATGGCACCATTAA 639 51.8 LPAMADAFKSATESSTTNSSSDPNKSKRTRNSEGKHPVYKGVRMRAWGKWVSEIREPRKKSRIWLGSFSTPEMAARAHDVAALTIKGKSAILNFPEMAGILPRPSSNSPRDVQAAAALAASMEVLPATPPESSHPPPSEQSSSSSSFDVPYPKELSEIVQLPSLGTSYELPESQFVVHDSEDRWLYTENYEYVSDQISMAEIESFDIFSWHH 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1748357 1748995 + Bma000366.1 Bma01g00199 74716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00199 212 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Bma01g00199 212 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Bma01g00199 212 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Bma01g00199 212 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Bma01g00199 212 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Bma01g00199 212 CDD AP2 39 96 IPR001471 GO:0003700|GO:0006355
Bma01g00199 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 11 195 - -
Bma01g00199 212 MobiDBLite consensus disorder prediction 9 25 - -
Bma01g00199 212 MobiDBLite consensus disorder prediction 1 39 - -
Bma01g00199 212 Pfam AP2 domain 37 87 IPR001471 GO:0003700|GO:0006355
Bma01g00199 212 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Bma01g00199 212 MobiDBLite consensus disorder prediction 126 150 - -
Bma01g00199 212 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00199 Bma-Chr1:1748357 Bma06g00819 Bma-Chr6:41823166 1.10E-92 dispersed
Bma01g00198 Bma-Chr1:1736158 Bma01g00199 Bma-Chr1:1748357 2.42E-103 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56615 PF00847 AP2 5.50E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00199 K09286 - tcc:18588535 219.935