Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00211 ATGAAGACGAAAACTCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGTCCAAGAAACGCCGATCACCTCCTTCTTGACTGCAAGTGGCACCTTTCACGATGGAGATCTATTATTAAACCAGAAAGGCCTGCGGCTTATCTCTGAAGAAAAGGAATCTCGTATTTTTTTTTCTATGTTTCAACAGCAATCGGACAGCAAGGAGCTTGATTGTGATTTCTCACTAGAAGACCTCGAGACTATGAATGTCATCGGAAAAGGAAGTGGTGGTGTTGTACAACTTGTTCGTCATAAATGGCTAGGAAAACTATTTGCTTTAAAGGTTGTCATCCAGATGAACATACAAGAAAATATACGAAAACAAATAGTGCAAGAGTTGAAAATAAATCAAACAGCCCAGTGTCCACAGGTGGTGGTGTGCTACCACTCATTCTACCACAATGGGGCTATTTCTCTTGTCCTAGAATACATGGATCGCGGATCTTTGGCAGATGTGATTCGACAAGTTAAAACAATTCTTGAACCATATCTGGCTGTTGTATGTAAACAGAGTTTGAAGTTAAATGAATTCCTTTTAATTTTTCTTACATTTCAGGTGTTACTGGGTCTTGTGTACTTGCATCATGAACGGCATGTCATACATAGGGACATAAAGCCATCCAATCTGCTAGTGAACCACAAAGGGGAGGTGAAAATTACTGATTTTGGTGTTAGTGCTGTGCTAGCTAGCTCTATGGGTCAGAGAGATACTTTTGTAGGAACTTACAACTACATGGCGCCAGAGAGAATTAGTGGGAGTACCTACGACTGCAGTAGCGATATTTGGAGCTTAGGCATGGTGGTACTTGAGTGTGCTATAGGACGGTTTCCCTACACGCAATCTGAAGATCAGAAGAGTTGGCCTAGCTTTTATGAGCTTTTAACAGCAATTGTGTCAAGCCCGCCTCCCTCTGCTCCACCAGATCAGTTCTCTCCAGAATTTTGTTCATTTATATCTGCATGCATTCAAAAGGACCTGCAAAGGAGATCATCATCTTTGGACCTCTTGGGTCATCCTTTCATCAAAAAGTTTGAAAACAAAGACATTGATCTGGGAATACTTGTTGGCAGCTTGGAACCGCCTTTAAATTTCTCCAGGTAA 1137 41.69 MKTKTPLKQLKLSVPVQETPITSFLTASGTFHDGDLLLNQKGLRLISEEKESRIFFSMFQQQSDSKELDCDFSLEDLETMNVIGKGSGGVVQLVRHKWLGKLFALKVVIQMNIQENIRKQIVQELKINQTAQCPQVVVCYHSFYHNGAISLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQSLKLNEFLLIFLTFQVLLGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAVLASSMGQRDTFVGTYNYMAPERISGSTYDCSSDIWSLGMVVLECAIGRFPYTQSEDQKSWPSFYELLTAIVSSPPPSAPPDQFSPEFCSFISACIQKDLQRRSSSLDLLGHPFIKKFENKDIDLGILVGSLEPPLNFSR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1878817 1881966 - Bma000381.1 Bma01g00211 74728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00211 378 SMART serkin_6 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00211 378 Pfam Protein kinase domain 78 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00211 378 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 377 - -
Bma01g00211 378 CDD PKc_MAPKK_plant_like 75 358 - -
Bma01g00211 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Bma01g00211 378 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Bma01g00211 378 Gene3D Transferase(Phosphotransferase) domain 1 175 367 - -
Bma01g00211 378 Gene3D Phosphorylase Kinase; domain 1 44 157 - -
Bma01g00211 378 PIRSF ILK 5 348 - -
Bma01g00211 378 SUPERFAMILY Protein kinase-like (PK-like) 75 361 IPR011009 -
Bma01g00211 378 ProSiteProfiles Protein kinase domain profile. 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00211 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00211 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - qsu:111995051 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00211 Bma-Chr1:1878817 Bma06g00881 Bma-Chr6:43614687 3.69E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00881 . 56 384 MAP Kinase Kinase Gene Family AT4G26070 61.1 1.4e-118 422.9
Bma01g00211 . 26 374 MAP Kinase Kinase Gene Family AT4G26070 52.8 1.7e-100 362.8
Bma11g00589 . 27 266 MAP Kinase Kinase Gene Family AT4G26070 70.8 6.9e-97 350.9
Bma06g00881 . 38 357 MAP Kinase Kinase Gene Family AT4G29810 62.0 2.3e-116 415.6
Bma11g00589 . 1 266 MAP Kinase Kinase Gene Family AT4G29810 70.9 4.1e-110 394.8
Bma01g00211 . 10 348 MAP Kinase Kinase Gene Family AT4G29810 55.0 1.6e-101 366.3
Bma14g01892 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma14g01928 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 77.4 1.8e-226 781.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT1G51660 67.6 2.9e-133 471.9
Bma10g00703 . 1 333 MAP Kinase Kinase Gene Family AT3G21220 66.7 7.0e-129 457.2
Bma01g00211 . 1 378 MAP Kinase Kinase Gene Family AT5G56580 79.4 2.8e-165 578.2
Bma06g00881 . 39 372 MAP Kinase Kinase Gene Family AT5G56580 58.3 2.3e-111 399.1
Bma11g00589 . 16 266 MAP Kinase Kinase Gene Family AT5G56580 61.9 1.4e-87 320.1
Bma10g00703 . 34 315 MAP Kinase Kinase Gene Family AT1G73500 50.2 5.9e-79 291.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66246 PF00069 Pkinase 4.30E-62 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00211 Bma_Chr01 FPKM 117.802803 118.915375 99.072815 105.218544 170.768967 157.231232 157.951019 123.710579 131.367325 123.82695