Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00212 ATGTCGTGGCAAACGTATGTCGATGAACATCTGATGTGCGACATCGAAGGAAATCAGCTCACTGCAGCTGCAATCATTGGGCATGATGGAAGCGTTTGGGCCCAAAGCTCCACCTTCCCTCAGTTCAAGCCTGAAGAAATAACTGGGATTATGAATGACTTTGCTGAGCCTGGAACACTTGCTCCAACTGGCTTGTACCTTGGAAGTGCAAAATATATGGTGATCCAAGGCGAGCCAGGAGCTGTTATTCGTGGGAAGAAGGGTCCTGGTGGTGTCACTGTTAAAAAGACAGGTCTGGCCTTAATCATCGGTATATATGATGAGCCAATGACGCCTGGTCAATGCAACATGATTGTCGAAAGGCTTGGAGATTATCTCATCGAACAGGGTCTCTAG 396 47.47 MSWQTYVDEHLMCDIEGNQLTAAAIIGHDGSVWAQSSTFPQFKPEEITGIMNDFAEPGTLAPTGLYLGSAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1882863 1884697 - Bma000382.1 Bma01g00212 74729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00212 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Bma01g00212 131 PANTHER PROFILIN 1 131 - -
Bma01g00212 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Bma01g00212 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Bma01g00212 131 CDD PROF 2 130 IPR005455 GO:0003779
Bma01g00212 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Bma01g00212 131 SMART prof_2 1 131 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Bma01g00212 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00212 Bma11g00546 CCT
Bma01g00212 Bma11g00546 ECH
Bma01g00212 Bma06g00836 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00212 Bma-Chr1:1882863 Bma11g00549 Bma-Chr11:7350242 3.11E-75 dispersed
Bma01g00212 Bma-Chr1:1882863 Bma11g00546 Bma-Chr11:7222520 3.11E-75 wgd
Bma01g00212 Bma-Chr1:1882863 Bma06g00836 Bma-Chr6:42349059 5.63E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00212 K05759 - qsu:111995052 244.588