Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00212 ATGTCGTGGCAAACGTATGTCGATGAACATCTGATGTGCGACATCGAAGGAAATCAGCTCACTGCAGCTGCAATCATTGGGCATGATGGAAGCGTTTGGGCCCAAAGCTCCACCTTCCCTCAGTTCAAGCCTGAAGAAATAACTGGGATTATGAATGACTTTGCTGAGCCTGGAACACTTGCTCCAACTGGCTTGTACCTTGGAAGTGCAAAATATATGGTGATCCAAGGCGAGCCAGGAGCTGTTATTCGTGGGAAGAAGGGTCCTGGTGGTGTCACTGTTAAAAAGACAGGTCTGGCCTTAATCATCGGTATATATGATGAGCCAATGACGCCTGGTCAATGCAACATGATTGTCGAAAGGCTTGGAGATTATCTCATCGAACAGGGTCTCTAG 396 47.47 MSWQTYVDEHLMCDIEGNQLTAAAIIGHDGSVWAQSSTFPQFKPEEITGIMNDFAEPGTLAPTGLYLGSAKYMVIQGEPGAVIRGKKGPGGVTVKKTGLALIIGIYDEPMTPGQCNMIVERLGDYLIEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1882863 1884697 - Bma000382.1 Bma01g00212 74729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00212 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Bma01g00212 131 PANTHER PROFILIN 1 131 - -
Bma01g00212 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Bma01g00212 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Bma01g00212 131 CDD PROF 2 130 IPR005455 GO:0003779
Bma01g00212 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Bma01g00212 131 SMART prof_2 1 131 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Bma01g00212 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Bma01g00212 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00212 K05759 PFN; profilin - qsu:111995052 244.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g00212 Bma11g00546 CCT
Bma01g00212 Bma11g00546 ECH
Bma01g00212 Bma06g00836 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00212 Bma-Chr1:1882863 Bma11g00549 Bma-Chr11:7350242 3.11E-75 dispersed
Bma01g00212 Bma-Chr1:1882863 Bma11g00546 Bma-Chr11:7222520 3.11E-75 wgd
Bma01g00212 Bma-Chr1:1882863 Bma06g00836 Bma-Chr6:42349059 5.63E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g252 . Blo16g01002 Bda01g02037 Bda11g01079 . . . Bma11g00546 . . Cma05g01374 . Car05g01288 . . . . . . . . . . . Cla11g00182 Cam11g0212 Cec11g0213 Cco11g0226 Clacu11g0347 Cmu11g0197 Cre11g0695 . . Cone4ag0755 . . Csa02g00080 Chy05g01409 . . Blo14g00527 . Bda09g01121 . Bpe13g01272 Bma01g00212 Bma06g00836 Sed11g0036 Cmo05g01377 Cmo12g01309 . . . . Cpe11g01144 Cpe07g01035 Bhi06g01687 Tan08g0108 Cmetu05g1709 . . . . . . . . . . . Lsi11g00217 . . Cme05g02013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.0e-215 743.8
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.6e-214 739.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.7e-213 738.4
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.2e-213 738.0
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT2G37620 96.2 2.2e-189 658.3
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT2G37620 96.2 7.7e-174 606.7
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT2G37620 95.5 1.4e-172 602.4
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT2G37620 89.4 1.2e-105 380.2
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.3e-213 738.8
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 8.4e-213 736.1
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.1e-211 731.5
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.3e-210 728.0
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT5G59370 96.2 9.3e-188 652.9
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT5G59370 96.2 3.2e-172 601.3
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT5G59370 95.5 5.5e-172 600.5
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT5G59370 89.4 2.9e-104 375.6
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 3.8e-213 737.3
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.8e-213 737.3
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 9.3e-212 732.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.0e-210 729.2
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G46520 96.4 4.2e-188 654.1
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G46520 96.5 1.4e-172 602.4
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G46520 95.8 2.5e-172 601.7
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G46520 89.8 1.3e-104 376.7
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.4e-215 745.3
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.3e-215 743.4
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.9e-213 737.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 6.4e-213 736.5
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G12110 96.7 7.6e-190 659.8
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G12110 96.8 2.6e-174 608.2
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G12110 96.8 3.4e-174 607.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G12110 89.4 9.0e-106 380.6
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 5.6e-209 723.4
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.4e-209 723.0
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.1e-208 721.5
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.2e-208 719.9
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT3G18780 92.9 5.7e-185 643.7
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT3G18780 93.3 2.3e-170 595.1
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT3G18780 92.9 1.1e-169 592.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT3G18780 86.1 7.1e-103 370.9
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.9e-209 724.9
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.5e-209 724.5
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 7.4e-209 723.0
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT1G49240 92.9 5.7e-185 643.7
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT1G49240 93.3 2.3e-170 595.1
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT1G49240 92.9 1.1e-169 592.8
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT1G49240 86.1 7.1e-103 370.9
Bma09g00406 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.5e-217 751.1
Bma03g01025 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 5.6e-217 750.0
Bma11g00120 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 3.4e-214 740.7
Bma08g01117 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.8e-213 737.3
Bma04g01498 . 1 338 Cytoskeleton Gene Families AT5G09810 96.4 2.9e-189 657.9
Bma04g01494 . 1 312 Cytoskeleton Gene Families AT5G09810 96.5 1.0e-173 606.3
Bma03g00129 . 1 312 Cytoskeleton Gene Families AT5G09810 96.2 3.8e-173 604.4
Bma10g01116 . 8 222 Cytoskeleton Gene Families AT5G09810 89.4 3.4e-105 378.6
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 78.6 9.2e-58 219.5
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 3.5e-57 217.6
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.6e-54 208.8
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT2G19760 75.2 1.6e-54 208.8
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.9e-56 214.2
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.9e-56 214.2
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 77.9 3.9e-56 214.2
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 6.6e-56 213.4
Bma01g00212 BCT,CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.0e-37 151.8
Bma11g00546 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29340 79.9 4.1e-61 230.7
Bma11g00549 . 1 133 Cytoskeleton Gene Families AT4G29340 79.9 4.1e-61 230.7
Bma01g00212 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 74.6 3.6e-57 217.6
Bma06g00836 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 74.6 6.8e-56 213.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma01g00212 Bma_Chr01 FPKM 17.77327 18.187626 18.006721 19.381416 18.870422 21.047897 19.286062 23.740086 22.062454 21.730495