Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00217 ATGATGCTCGGTGAACCCTACAGTTCCGGCGTCCCGACGTGGTCGGTAAGCGATTATGATTCAGTGACTGATATTTTCAATCCTTTTGGAAGATCTGTCCGCTGCCACAGCAATGGGAATGGAGGAGACTACTCTCCTCAAGAGGCTTACACGGGGCTGCAGCGCTACTTGCCGTCGAATGAACGGGACAGTGATATTTCTGGTCGGGAAATGGATTCTACCGTCGACGCCTACTCCTGCGACCAGTTCCGGATGTTTGAGTTCAAGGTGAGGAGGTGCGCTAGAGGAAGGTCTCATGATTGGACTGAGTGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGATCCGACGAAGTATCACTACTCTGGTACTGCATGTCCGGATTTTCGAAAAGGAAGTTGCAAGAAAGGCGATTCGTGCGAGTTCTCTCATGGTGTTTTCGAGTGCTGGCTTCACCCGGCGCGTTACCGGACTCAGCCGTGCAAAGACGGAACGAGTTGCCAGCGACGGGTTTGTTTCTTCGCTCACACAGCGGAGCAACTTCGACTTTTACCTCATCAGAGTCCGAGGAGTCCAAACGCTGCTACTTACTCCTACGACGGTTCACCTCTCCGGCATGCCATTGAGGCGTCGAGTGCAAAAAATTTAACGTTTTTGTCTTCTCCGATGAGTTCACCCCCGATGACTCCTCAGGCAGAATCTCCGCCTATATCGCCGATGGCTCAGTCGCTCAGCCGGTCTTTCGGTTTGAATCCAGTAGGAGAAATGGCGGCTTCTCTTCGAAACCTGCAGATTAGCAAATTGAAGTCCCTTCCCTCTGCTTGGAATGTCCAAATAGGATCTCCGAGAGGTTCGATCCTTCGACTTGACGGGTGCAGCCTACCTGCGACGCCAACTCGAGCTTCTCCTCGTTCCGTTAATGGCGGATATGTTGATTTCTGGGACCAAACTGTGGAGGAGGAGCCAGCGATGGAGAGGGTAGAATCAGGGAGAGGACTCAGAGCTAAAATGTTTGAGAAACTGAGAAAGGAAAACTTCACTAATGAAGCCCATCCCGATTCATCGTCTGCTGCACCGGACGTCGGTTGGATTTCAGAGCTGTTGCAGTAA 1116 52.24 MMLGEPYSSGVPTWSVSDYDSVTDIFNPFGRSVRCHSNGNGGDYSPQEAYTGLQRYLPSNERDSDISGREMDSTVDAYSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPTKYHYSGTACPDFRKGSCKKGDSCEFSHGVFECWLHPARYRTQPCKDGTSCQRRVCFFAHTAEQLRLLPHQSPRSPNAATYSYDGSPLRHAIEASSAKNLTFLSSPMSSPPMTPQAESPPISPMAQSLSRSFGLNPVGEMAASLRNLQISKLKSLPSAWNVQIGSPRGSILRLDGCSLPATPTRASPRSVNGGYVDFWDQTVEEEPAMERVESGRGLRAKMFEKLRKENFTNEAHPDSSSAAPDVGWISELLQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1937404 1938519 + Bma000387.1 Bma01g00217 74734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00217 371 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 147 IPR000571 GO:0046872
Bma01g00217 371 PANTHER UNKEMPT FAMILY MEMBER 9 370 IPR045234 -
Bma01g00217 371 MobiDBLite consensus disorder prediction 221 243 - -
Bma01g00217 371 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Bma01g00217 371 SMART c3hfinal6 157 180 IPR000571 GO:0046872
Bma01g00217 371 Gene3D - 118 190 - -
Bma01g00217 371 ProSiteProfiles Zinc finger C3H1-type profile. 123 149 IPR000571 GO:0046872
Bma01g00217 371 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 9 370 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00217 Bma11g00559 CCT
Bma01g00217 Bma11g00559 ECH
Bma01g00217 Bma06g00840 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00217 Bma-Chr1:1937404 Bma11g00559 Bma-Chr11:7612067 1.10E-114 dispersed
Bma10g00909 Bma-Chr10:17659737 Bma01g00217 Bma-Chr1:1937404 9.75E-56 dispersed
Bma01g00679 Bma-Chr1:6211409 Bma01g00217 Bma-Chr1:1937404 2.74E-124 transposed
Bma01g00217 Bma-Chr1:1937404 Bma11g00553 Bma-Chr11:7572913 7.55E-109 wgd
Bma01g00217 Bma-Chr1:1937404 Bma06g00840 Bma-Chr6:42728230 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56617 PF00642 zf-CCCH 6.70E-06 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00217 - - jre:109010264 502.671