Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00252 ATGGACGGAGCAGCTGCTTACAACCCCCGTACTGTGGAAGAGGTTTTCAAGGATTTTAGGGGCCGTCGAGCTGGCATGATCAAAGCTCTCACCACTGACGTCGAAGAATTTTATCAGCGGTGCGATCCTGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGCAGTGGGAAGTTAATTTGCCAGCTGAAGAAGTGCCGCCGGAGCTGCCCGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCATGGTTATTTTCAGTGGCTTTTTATTTTGGTTCCAGATTTGGTTTCGATAAAACTGACAGGAAACGTCTGTTCACAATGATAAATGATTTACCGACAATATTCGAGGTAGTGAGAGGTTCAAAGGGGTTGTCGAAAGAAGAGGAAGAAGAGTTGGAAGAAGCTGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGCATGGGGAGACCTTATGTGGGGCATGTGGAGATAACTATGCATCGGACGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCACGGCAAATGCGTAAAGATAACTCCAGCCAGGGCCGAGCACATCAAGCAATATAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGGCCCTGA 672 47.77 MDGAAAYNPRTVEEVFKDFRGRRAGMIKALTTDVEEFYQRCDPEKENLCLYGLPNEQWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLFSVAFYFGSRFGFDKTDRKRLFTMINDLPTIFEVVRGSKGLSKEEEEELEEAEEEEEEEEEEHGETLCGACGDNYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2166370 2169228 + Bma000419.1 Bma01g00252 74769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00252 223 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 140 - -
Bma01g00252 223 ProSitePatterns Zinc finger PHD-type signature. 170 216 IPR019786 -
Bma01g00252 223 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 148 223 - -
Bma01g00252 223 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Bma01g00252 223 PANTHER CPG BINDING PROTEIN 3 140 IPR045104 GO:0006355|GO:0042393
Bma01g00252 223 PANTHER CPG BINDING PROTEIN 148 223 IPR045104 GO:0006355|GO:0042393
Bma01g00252 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 218 IPR013083 -
Bma01g00252 223 ProSiteProfiles Zinc finger PHD-type profile. 167 219 IPR019787 -
Bma01g00252 223 CDD PHD_AL_plant 169 219 IPR044104 -
Bma01g00252 223 Pfam PHD-finger 170 219 IPR019787 -
Bma01g00252 223 SUPERFAMILY FYVE/PHD zinc finger 158 220 IPR011011 -
Bma01g00252 223 Coils Coil 137 168 - -
Bma01g00252 223 SMART PHD_3 169 217 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00252 Bma11g00599 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00252 Bma-Chr1:2166370 Bma02g00545 Bma-Chr2:11058348 8.49E-117 dispersed
Bma01g02201 Bma-Chr1:78932295 Bma01g00252 Bma-Chr1:2166370 2.14E-93 transposed
Bma01g00252 Bma-Chr1:2166370 Bma06g00890 Bma-Chr6:43804599 1.54E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56623 PF12165 Alfin 4.30E-69 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00252 - - pop:7497594 390.963