Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00269 ATATCGATAGTTGGCTATTTGTCCTCGAATATATTACTGATGTTTTATTTTGTACGATATGAACTATATGACAAGGAAGGTTTATTGGCATCTGATATAGGCCTCAAGCAAAGCCGGCAACCTGCTGAGTTCTTCTGTAAAACTCTTACAGCTAGTGACACGAGCACTCATGGTGGATTTTCTGTACCTCGTCGAGCGGCTGACAAGATCTTTCCACCACTAGATTACTCGATGCAACCCCCTGCTCAGGAGCTTGTCGCTAGAGATCTACACGAAACTTCATGGACATTCAAGCATATTTACCGAGGCCAACCTAAAAGACATCTGCTGACTACTGGCTGGAGTGTTTTTGTTAGTACGAAACGTCTTTTTGCCGGAGATTCAGTTCTTTTCATAAGGTATCAAGCTGTTTTTTTACTAAAATTTTTCCGGGACTTACCAATAATTATCCGTTTGATATGTTTTTCTAGAGATGAAAAATCACAGTTTCTCCTAGGCATACGGCGGGCTAATAGGCAGCAGCCAGCTCTCTCTTCTTCTGTGATTTCTAGCGATAGCATGCACATTGGAATTCTTGCTTCTGCAGCTCATGCTGCATCAAATAATAGTCCGTTCACTATATTTTATAATCCTAGGGCAAGTCCTTCTGAATTTGTAATTCCCTTGGCCAAATACAATAAAGCAATGTACACCCAAGTTTCCCTTGGCATGCGATTTCGAATGATGTATGAGACGGAGGAGTTAGGGGTGCGTAGATATATGGGTACAATAACTGGTATTAGCGACTTGGATTCATTGCGATGGAAAAGCTCACAATGGCGTAATCTTCAGGTTGGATGGGACGAATCAGCAGCTGGTGAAAGGCCCAGCCGAGTCTCCATCTGGGAAGTCGAGCCAGTCATAACTCCTTTTTACATATGCCCGCCTCCATTTTTTAGACCCAAACAGCCAGGAATGCCAGATGATGAATCCGAAATCGAAAACGCTTTCAAACGAGCTATGCCATGGCTTGGAGATGATTTTAGCATGAAGGACACTCAGAGCCCGATCTTTCCCGGTCTAAGTCTAGTGCAGTGGATGAATATGCAGCAAAATAATCAATTTCCGTCAGCCCAAGCTGGATTTTTACCGTCTATGGTCTCTCCAAACGCCCATTCCCTGCATAATAATTTAACCACTGATGATCCATCTAAATTACTGAGTTTCCAAACTCCATTACTATCTTCACCTACTCCTCCCTATAATAAATCTAATCAGCAAGGCCAAGTTAGCCAATTGCAGCAGCCATCCTCTGCGTGGCCCCAACAGCATCAACCTCAGCCTCTTTCTCAGGCAAAGCCATTATTGCAGATTCCAACCAGCCAACAGCTACATCGGCAGCAGCCACAGCACCAACAAAACAAGCAAATTCTACCTCAACAACAGCTTTGCCAACCACCTCCTTCAAATAATAATGGTTTTGTTGGTAACCAGATGCAGAATCAAAATTTGGAGCAACTGGTGGTGTCCTCTCAGCTTCAGCAGCAAGAGTTTCTGGCGGGCAATGGACAAACCCAGCAAAACATGAATAGATCATTTCAGATGACATCCTTACCACAAGATTCCATTTTTCAGCAACAAATGGAACAGCAAGTCAACCTCGTTCCTAGGAATCAGCAACAACCTGGCCTTTCACAAAGAGCATCTCAGACTCAACCAGTTCAACAGTTGCCTCAACAATCGCCATTAGACCACCAACTTCAGATGCAGATGCTCCAGAAATTACAGCAGCAGCAACAGCAGTTGCTCTTTCCAGCAAACCCATTATTACAGTCTCAGCCAGTACAGCTTCTGCAGAGCCATCATCAGAACCACCCACTACAAAACACCAATGCCTTTTCAACTTCAGGCCTTCTGCAGTCTCAACATATTCCCACGCCCCAGCCCCAGTACCAGCCCAAGGGTGGTCAATTCAAGCCTCTCCATGGCATCAGAGCTCAGTCTATGACGGATGGTGATGCCCCATCTTGCTCAACTTCACCTTCCACCAATAATTGCCATGTTTCAACATCAAACATTTTGAACAGAAAGCAAGGGCCAGTCACTCTAGCAGAATGTTCAGTAGTTGAGCCTTCAAACAGTCTACTTCAGGAACTTCAAAGCAAATATGATAGCCGAATCAAACATGAATTTCCATGTGAGAAAGGACCAGATCTAATCAAATACAAGAACCCAATCACTGAGCAGTTAGAAGCATCCTCTTCTGGAACATCATACTGCCTAGATGCTGGCCCAACACAGCAGCCTATTCCACTCCCTGTCTGTTTAGACAACGATGTCCATTCCCATCATCGGATGAACATTCCTTTCACGAGTAACATTGATGGGTTGATGCCGGATTCTTTATTGTCGAGACAATATGACTCTCAAAACTTACTTTCTAACTACACTAGCCTTCCAAGAGATATTGAGACAGAGTTGTCTAGTGCGCCTATCAGCCCACAGCCATTTGGAGTGCCAAACATGCCTCTTAAGCCAGGCTGCTCAAATGACGTCCCGATAAATGATTCGGGAGCCATGGGCGGCGGGTTGTGGGCAAATCACAGTCAACGCATGCGTACCTATACAAAGGTTCAAAAGCGCGGATCTGTAGGAAGATGTATTGATGTGACCCGTTACCGAGGATATGGAGATTTAAGGTGTGATGTTGCCCGTATGTTTGGGATCGAAGGGCTGCTAGAAGACCCTCAAAGAACCGATTGGAAGCTTGTTTATGTAGATCACGAAAATGACATACTCCTTGTCGGAGATGATCCATGGGAAGAGTTTGTGAGCTGTGTTCAGAGCATAAAAATACTTTCGTCGGCTGAAGTACAGCAAATGAGTATGAACGGAGATTTGGGTCAAATTCAAATTCCGAATCAAGCGTGTAGTGGGACGGACAGTGGAAATGCTTGGAGAGACGACCACTCAGCAGCTTCCTTCAATAGATAG 2973 44.6 ISIVGYLSSNILLMFYFVRYELYDKEGLLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAADKIFPPLDYSMQPPAQELVARDLHETSWTFKHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRYQAVFLLKFFRDLPIIIRLICFSRDEKSQFLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMYETEELGVRRYMGTITGISDLDSLRWKSSQWRNLQVGWDESAAGERPSRVSIWEVEPVITPFYICPPPFFRPKQPGMPDDESEIENAFKRAMPWLGDDFSMKDTQSPIFPGLSLVQWMNMQQNNQFPSAQAGFLPSMVSPNAHSLHNNLTTDDPSKLLSFQTPLLSSPTPPYNKSNQQGQVSQLQQPSSAWPQQHQPQPLSQAKPLLQIPTSQQLHRQQPQHQQNKQILPQQQLCQPPPSNNNGFVGNQMQNQNLEQLVVSSQLQQQEFLAGNGQTQQNMNRSFQMTSLPQDSIFQQQMEQQVNLVPRNQQQPGLSQRASQTQPVQQLPQQSPLDHQLQMQMLQKLQQQQQQLLFPANPLLQSQPVQLLQSHHQNHPLQNTNAFSTSGLLQSQHIPTPQPQYQPKGGQFKPLHGIRAQSMTDGDAPSCSTSPSTNNCHVSTSNILNRKQGPVTLAECSVVEPSNSLLQELQSKYDSRIKHEFPCEKGPDLIKYKNPITEQLEASSSGTSYCLDAGPTQQPIPLPVCLDNDVHSHHRMNIPFTSNIDGLMPDSLLSRQYDSQNLLSNYTSLPRDIETELSSAPISPQPFGVPNMPLKPGCSNDVPINDSGAMGGGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYRGYGDLRCDVARMFGIEGLLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSMNGDLGQIQIPNQACSGTDSGNAWRDDHSAASFNR 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2235875 2240521 - Bma000435.1 Bma01g00269 74786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00269 990 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 154 980 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma01g00269 990 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 134 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bma01g00269 990 Gene3D - 861 955 - -
Bma01g00269 990 Pfam Auxin response factor 195 277 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma01g00269 990 SUPERFAMILY CAD & PB1 domains 879 944 - -
Bma01g00269 990 MobiDBLite consensus disorder prediction 386 442 - -
Bma01g00269 990 Gene3D - 43 170 IPR015300 -
Bma01g00269 990 MobiDBLite consensus disorder prediction 454 490 - -
Bma01g00269 990 MobiDBLite consensus disorder prediction 971 990 - -
Bma01g00269 990 ProSiteProfiles B3 DNA-binding domain profile. 45 146 IPR003340 GO:0003677
Bma01g00269 990 Pfam B3 DNA binding domain 45 142 IPR003340 GO:0003677
Bma01g00269 990 SMART B3_2 45 146 IPR003340 GO:0003677
Bma01g00269 990 PANTHER AUXIN RESPONSE FACTOR 19 23 134 - -
Bma01g00269 990 Pfam AUX/IAA family 911 953 IPR033389 -
Bma01g00269 990 CDD B3_DNA 44 144 IPR003340 GO:0003677
Bma01g00269 990 Gene3D - 232 302 - -
Bma01g00269 990 SUPERFAMILY DNA-binding pseudobarrel domain 35 136 IPR015300 -
Bma01g00269 990 ProSiteProfiles PB1 domain profile. 866 950 IPR000270 GO:0005515
Bma01g00269 990 PANTHER AUXIN RESPONSE FACTOR 19 154 980 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g00269 Bma06g01012 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00269 Bma-Chr1:2235875 Bma07g00655 Bma-Chr7:10909727 0 dispersed
Bma01g00269 Bma-Chr1:2235875 Bma06g01012 Bma-Chr6:46669733 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56626 PF02309 AUX_IAA 5.80E-08 CL0072 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00269 K14486 - zju:107406859 1229.54