Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00272 ATGGATGAAAACGGGGGCAACAAGTTGAGGGGAATAAGGCAGATCGTGAGGCTCAAGGAACTCCTGCAAAAATGGCAGTCTGTGACGCTTGGTTCAAAGCCAAACTCTCCGACCAATGAAAACCAAGTAGGCTCCATTTCTCATCCCTCCATTAACAAAAGGCTCACGACTGTGGTATGTTGTGATTTAGACGAGGACAGCTGCCAGAGCCCTGAGCATTCACACTCAGACATCCCCAAAGGATATTTGGCTGTTTATGTTGGGCCGGAGCTCCGGAGATTTATCATCCCCACCACCTATCTTAGCCATTCTCTCTTCAAGGTGTTGCTCGAAAAGGTCGAGGAGGAGTTCGGATTTAATCACACCGGCGGCCTGACCATCCCTTGTGATATAGAGATCTTCAAGTATCTTCTGAAATGCATGGAAAACCATCACAATTTTCTTACCGATCAAACTGACGACACAAATCCAGGTATGCCTCCTTCAATTGCTTACTTCTGTAGATCTTCTGCATCTTTTCGATCTCACCGAATTATGTTTCATAAGTTATCGTTTTATGCGATGTTTATCGGAAGATTTCGACGTTTTAATCCATCAGAACATCATCTTTACACCCTTTTGTCCATGCCTTTGTAG 636 44.65 MDENGGNKLRGIRQIVRLKELLQKWQSVTLGSKPNSPTNENQVGSISHPSINKRLTTVVCCDLDEDSCQSPEHSHSDIPKGYLAVYVGPELRRFIIPTTYLSHSLFKVLLEKVEEEFGFNHTGGLTIPCDIEIFKYLLKCMENHHNFLTDQTDDTNPGMPPSIAYFCRSSASFRSHRIMFHKLSFYAMFIGRFRRFNPSEHHLYTLLSMPL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2275201 2275836 + Bma000439.1 Bma01g00272 74789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00272 211 Pfam Auxin responsive protein 59 140 IPR003676 GO:0009733
Bma01g00272 211 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 155 IPR003676 GO:0009733
Bma01g00272 211 PANTHER BNAA02G05090D PROTEIN 7 155 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00272 Bma-Chr1:2275201 Bma03g00582 Bma-Chr3:4881826 6.22E-21 dispersed
Bma01g00272 Bma-Chr1:2275201 Bma01g00273 Bma-Chr1:2278676 4.76E-08 tandem
Bma01g02493 Bma-Chr1:82655557 Bma01g00272 Bma-Chr1:2275201 3.86E-26 transposed
Bma01g00272 Bma-Chr1:2275201 Bma06g01006 Bma-Chr6:46579322 1.39E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00272 K14488 - cpap:110808074 220.32