Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00279 ATGAATGCAAAGTTCCCGACATGGATGTCAAAGAAAGATCGCCGGATCTTGCTGAGTGATGACGAATATGACCCAAGCCAAGTGCTAACTGTTGCAGCAGACGGAACAGGAAACTTCACCACCATTACAGATGCTGTCAATTTTGCTCCAAACAATAGTAACGACAGAACAATTATCTATATAACTCAAGGGGTTTATGAAGAAAACGTGGAGATACCAAACAACAAGTACAACATTGTTTTTCTGGGGGATGGAAGTGACGGTACCATCATTACTGGTAAAAGAAGCGTGGGAGACGGTTGGACCACTTTCAGATCTGCAACCTTGGCGGTGTCTGGAGACGGATTCTTGGCTAGAGATATAACAATTATGAACACAGCTGGACCAGAGAAGCACCAAGCGGTTGCCCTGAGAGTAAATGCAGACTTGACTGCATTATATCGGTGTTCAATAAATGGTTACCAGGATTCATTGTATGTTCACTCATTTCGTCAATTCTATAGAGAGTGCAACATTTCAGGAACAATAGATTACATATTTGGTAATGCTGCAGTGGTTTTCCAGGCATGCAACATAATTTCCATAATGCCGATGCCCAACCAATTCACAGTTATCACGGCCCAGTCTCGAGATACCCCCGATGAGGTGACTGGAATTTCTATCCAGAACTGCTCAGTAATTGCTTCAGATGAGCTGAATGCAAACCGTGCGAAGGTCAAAAGTTACCTTGGGAGGCCATGGCGGGTGTACTCTCGATCAGTATACATAGGGTCCTACATTGATGAGTTCATTGAGCCAGTGGGATGGACCAAGTGGTCTGGTGATGAAGGATTGGAGACACTCTACTATGGAGAGTATGGAAACTACGGTCCTGGTTCGGGAACGGATGACAGAGTTTCGTGGGGAGGGTACCACAAAATGGATTACTATGATGCTTATAATTTCACGGTGTCAGAGTTTATCACTGGCGATGAGTGGCTTGACTCCACTTCGTTTCCTTACGACCAGGGAATTTGA 1017 44.64 MNAKFPTWMSKKDRRILLSDDEYDPSQVLTVAADGTGNFTTITDAVNFAPNNSNDRTIIYITQGVYEENVEIPNNKYNIVFLGDGSDGTIITGKRSVGDGWTTFRSATLAVSGDGFLARDITIMNTAGPEKHQAVALRVNADLTALYRCSINGYQDSLYVHSFRQFYRECNISGTIDYIFGNAAVVFQACNIISIMPMPNQFTVITAQSRDTPDEVTGISIQNCSVIASDELNANRAKVKSYLGRPWRVYSRSVYIGSYIDEFIEPVGWTKWSGDEGLETLYYGEYGNYGPGSGTDDRVSWGGYHKMDYYDAYNFTVSEFITGDEWLDSTSFPYDQGI 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2334681 2336075 - Bma000448.1 Bma01g00279 74796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00279 338 PANTHER PECTINESTERASE 8 337 - -
Bma01g00279 338 Gene3D - 24 338 IPR012334 -
Bma01g00279 338 ProSitePatterns Pectinesterase signature 2. 172 181 IPR033131 -
Bma01g00279 338 Pfam Pectinesterase 30 324 IPR000070 GO:0030599|GO:0042545
Bma01g00279 338 SUPERFAMILY Pectin lyase-like 25 337 IPR011050 -
Bma01g00279 338 PANTHER PECTINESTERASE 8 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00279 Bma-Chr1:2334681 Bma09g00750 Bma-Chr9:45969162 1.27E-125 dispersed
Bma01g00279 Bma-Chr1:2334681 Bma07g00579 Bma-Chr7:8181006 4.23E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00279 - - twl:119993469 558.525