Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00291 ATGGAGATTTTCAGATGCTTGGGTTGGCTTCTTCTTACTGTTTCACTGTTTTTTGTTGCAGAGGCAGCCATGGATCCTTACTCGGAAGCTCTTCTGAGCTTGAAATCAGAACTCATTGATAACAATGGCAGCTTGAGCGATTGGGCTGTACCTTCTGGAGAAAACACATCAGTCCTAGTTCATGCATGCTCGTGGAATGGAGTTGTATGCAACAAGAATTCCACCTTTGTAATTGGTCTCGACCTCTCCAAGAAGAAGCTCGGCGGCGTAATTTCCGGCGACAATATCGGTCGTTTGGGCGAGCTTTTCGAGCTGAATCTCAGTCACAACTCATTTTCGGGGGAGTTTCCCGTGAAAGTTTTCACCCTCACCAATCTAAGAAGTCTGGATATCAGCAGAAACAACTTTTCCGGCCACTTTCCGGGTGGGATTTCCAGTCTTCAAAACTTGGTTTTGCTTGATGCATTCAGTAACAGCTTTTCAGGGCCCTTGCCTGTTGAAGTTTCCAGGCTTGACAAACTCAAATTTCTCAACTTAGCAGGAAGTTACTTCAAGGGATCAATCCCATCAGAATATGGTTCTTTCAAAAGCCTCGAGTTCCTTCATCTTGCCGGAAATTTTCTAACTGGAAACTTACCTGCAGATATGGGAAAGCTCAAAACATTGACACATATAGAAATTGGATATAATACTTATCAAGGAGGTATTCCTTGGGAATTTGGTAATATGAGTGAGCTTCAGTACCTTGATATTGCAGGTGCAAATTTATCTGGATCGATACCGAAAGAACTCAGCAATCTTACCAAACTCGAGTCTCTTTTCCTTTTCACAAACCAGCTCACTGGGTTGATACCATGGGAGTTGAGCAGAATTACGACTCTCACAAGCTTGGATCTTTCAGATAATCGGATTTCTGGTCCTATACCTGAAAGTTTTTCAGAGCTGAAGAATCTGAGACTTTTAAGTCTGATGTACAATGAGATGAGTGGTAATGTTTCAGAAAAGATTGCAGAGCTTCCATCGATGGAGACTCTTCTTATTTGGAACAACTTTTTCTCTGGGTCACTTCCTCAAAATTTGGGAAGAAACAGAAAACTCAAGTGGGTGGATGTTTCAACAAACAACTTCAGCGGTGAAATTCCTCTAGATATATGCTCAGGCGGAGTTTTATTTAAACTCATCCTGTTTTCAAACAAGTTCAGTGGTGGACTTTCAACATCTCTTTCGAATTGTTCTTCACTAGTTCGTCTTCGACTGGAAGATAACTTATTTTCAGGTAATATCTCCTTGAAATTCAGCAATCTTCGTGATATCACATATGTAGACCTTTCCAGGAACAAATTTAGAGGAGGAATTCCAACAGATATAGTTCAAGCTTCCAACCTTCAATACTTTAATGTCTCCAACAACCCAGACTTAGGAGCTGAGATTCCTCCAGAAATGTGGTCCATGCCATTTCTTCAGAATTTCTCAGCCTCGTATGGTGGCATCTCAGGCAATCTTCCTCCCTTCCAATCATGCAAATCCATTTCAGTAGTTGAACTAGAGAGTAATCATTTATCAGGAATAGTTCCAGCGAGTATTTCTGACTGTCATGATCTCACAAAAATCGACTTAGCTAACAATAATTTATCCGGTCACATACCTGAGGAGCTAGCAAACCTTCCTTCCCTTGCTGTTCTTGATCTATCACGCAATAGTTTTACTGGAAAAATCCCCACGAACCTCAGTTATTCCTCCAGCTTGTTGCTACTGAACGTCTCCTTCAATGATTTATCTGGATCCATTCCCTCACAAAACCTGTTTCAATCCATGGATCGAAGTGCATTTGTTGGAAATTCGAAGCTATGTGGAGCACCTCTGCGGCCATGTTCCAACTCAATCGCAATACTGGGGACCAAAGGCATGGGAAAGCTTGCGCTGATCCTTATATTATCTGCAGGTTTGGCAATATTCACTGCAATAGCAGTCATGGGAATGTTTTACTTCCGAAAAGGGAGCAAAGGTCAATGGAAGATGGTCTCCTTTACAGGGCTCCCTCTATTCACAGCAAATGATGTTCTGAGAAGCTTCAGCTCTGAAGAATCAAAGAATGCAGCCCCGCCCTTGTCGACTTCTATCAGTAAAGCAGTTCTGCCAACAGGAATAACAGTTTCAGTGAAGAAGATAGAATGGAAAACAAAGAGAATACGAGCTATGTCAGAATTTATAACACAATTAGGCAATGTGAGGCACCAGAATTTGGTCAGATTGCTTGGGTTTTGCCACAACAAGCAAATGGCTTATCTCTTGTTTGATCACTTGCCAAATGAGAATTTAGCTGACAAAATTGCAACAAACAAGGAATGGTTATTTAAGGCAAAAATAGTGATGGGCATTGCAAAAGGACTGTGCTTCCTTCACCATGACTGTTACCCTGCAATTCCTCATGGAGATTTAAAGTCAAGTAACATAGTTTTTGATGAAAATATGGAACCCCATCTGACAGAATTTGGATTGAAGTTTCTAATGCAGCTGAATGGATCTTCACTTCCAACATCTTCCAGAAGAGAAACAGGCATCTTTGGAGAGATCATCATGGAGATTTTAACAAATGGCAGGCTGATCAATGCAGGAACAAGCATACAGAATAAGCGAAGAGAAGATCTATTGAGACAAATTCTTGAAGAGAATAAGATTAACTCCATGAATTCACAAGAGGAGGCAAAACTGGTTCTTGAAGTTGCTATACTCTGCACCAAGAGTAGACCTTCTGAACGCCCGTCCATGGAAGATTTATTAAAGCTTTTATCAGGGATTGAACGGATGTCAGGTTGGGACGAAGGTGCAATCTTCTATAGCGATCAGGCTCAGTCTCTCGGAGATGGTTCCGGCGGTGGTCGTGCCGGAGATCCAGAATCTGCAGGTGCCACAAACCACTCGGTTCTTCGTAAGTTCAAGGAGTTTATCCGAAGCTTTGAAACCGATAAAAATGTCTTCCCCTATAGAGAAAGCCTGCTCCATAATCCAAGATTCCTCTGCGTCGACATGGAAGATCTTAACGCCTTCGATGCTGACCTCCCAGATAAGCTACGGTCTTCTCCCGCCGATTACTTGCCCCTGTTCGAGACTGCAGCAGCGGAAGTTTTGATGAATTTAAGGACGAAGGTAGCAGGAGAGACCGGAGAAATGGTGGAACCGGTGCCTGGAGATGTCCAAATCCTTCTTATTTCAAACGAGGATCCGATGTCAATGCGTTCACTTGGGGCTCAATACATATCAAAACTTGTGAAAATTTCTGGAATCACCATTGCCGCGTCAAGGACAAAGGCAAAGGCAACATATGTAATCTTATTATGTAAGAACTGTAGAAGTATGCAAAGAGTTTCCTGCAGGCCAGGACTTGGGGGAGCGATTGTCCCTCGTTCTTGTAATCATATTCCGCAGGCCGGAGAGGATCCATGCCCATTGGATCCTTGGATAGTGGTTCCTGACAGAAGCACGTATGTTGATCAACAAACATTAAAATTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCCAGGAATATGCTTTTGTCAGTTGATCGCCATCTTGTTCAAACAATTGTTCCAGGCACAAGATTGACCATCATGGGGATATATAGTATCTTTCAAGCTGCAAATTCCTCAGCATCCCACAAAGGAGCAGTTGCAGTTAGGCAGCCTTACATCAGAGTTGTGGGTATGGAAGAAGCCAGTGAAGCTAACTCTAGAAGTCGTGTGTCTTGTACACCAGAAGAAGTAGAAGAGTTCAAAAAATTTGCTGCAGAACCTGATGTGTACAAAAGCATATGTTCTAAGATTGCACCCTCCATATTTGGTCATGATGATGTGAAGAAAGCCGTGGCTTGTCTTCTGTTTGGAGGATCTAAAAAGAATTTGCCAGATGGTGTGAAGCTAAGAGGTGATATCAATGTTTTACTTTTAGGAGATCCATCTACTGCTAAATCACAGTTTCTCAAGTTTGTTGAAAAGACAGCGCCCATTGCTGTTTATACTTCTGGGAAAGGTTCCTCAGCTGCTGGCCTTACAGCTTCTGTGATTAGAGATAATAGCTCTCGGGAGTTTTATCTTGAAGGAGGTGCCATGGTTTTGGCAGACGGTGGTGTTGTCTGCATTGATGAATTTGATAAAATGAGACCAGAGGATAGGTACATGAAACTTGAACTATTTCTTGACATCTTCCCTCATCTACCAAACTACCAAATTTCAAATTTATTTATTTTCTTTATTAGAGTTGCAATTCATGAAGCCATGGAGCAGCAAACTATTTCCATTGCCAAAGCTGGAATAACCACAGTTCTAAATTCCAGAACCTCAGTCCTCGCAGCTGCTAATCCTCCGTCTGGACGTTATGATGATCTTAAGACTGCTCAGGATAACATCGATCTGCAGACGACCATTCTTTCTCGTTTTGATTTAATCTTCATTGTGAAAGATATCAGAATGTACAGTCAGGACAAGATTATAGCTAGCCATATAATAAAAGTTCATGCATCAGCTAATTCGACCAAGGGAGAAAATCGAGCTTCCAAAGAGGATAATTGGCTGAAGAGGTATATACAATATTGCCGAACAGAATGCCACCCGCGATTGTCAGAATCTGCTTCTGCGATGCTCCAGAATAGTTATGTTAAAATCAGACAGGACATGAGGAAGCAGGCAAATGAAACTGGAGAGACTACTCCTATTCCCATTACTGTCAGGCAACTAGAAGCTATTGTCCGGATAAGTGAAGCACTAGCAAAAATGAAATTGTCACATGTTGCCACAGAGGAAAATGTGCAAGAGGCCATACGTATATTTACTGTTTCTACTATGGATGCAGCACGTTCTGGGATAAATGACGTAGTAAATCTTACATCAGATATGGCAAATGAGATAAAGCAAGCAGAAACTCAGATCAAGAGAAGAATAGGAATTGGAAACCACATTTCCGAAAGACGACTGATCGATGATCTCACCAGAATGGGCTTGAATGAATCTATTGTGAGAAGAGCTCTCATAGTTATGCACCAGAGGGATGAAGTGGAATACAAGAGAGAAAAGCGCTTTATTTTCCGAAAAGCATGA 5100 41.96 MEIFRCLGWLLLTVSLFFVAEAAMDPYSEALLSLKSELIDNNGSLSDWAVPSGENTSVLVHACSWNGVVCNKNSTFVIGLDLSKKKLGGVISGDNIGRLGELFELNLSHNSFSGEFPVKVFTLTNLRSLDISRNNFSGHFPGGISSLQNLVLLDAFSNSFSGPLPVEVSRLDKLKFLNLAGSYFKGSIPSEYGSFKSLEFLHLAGNFLTGNLPADMGKLKTLTHIEIGYNTYQGGIPWEFGNMSELQYLDIAGANLSGSIPKELSNLTKLESLFLFTNQLTGLIPWELSRITTLTSLDLSDNRISGPIPESFSELKNLRLLSLMYNEMSGNVSEKIAELPSMETLLIWNNFFSGSLPQNLGRNRKLKWVDVSTNNFSGEIPLDICSGGVLFKLILFSNKFSGGLSTSLSNCSSLVRLRLEDNLFSGNISLKFSNLRDITYVDLSRNKFRGGIPTDIVQASNLQYFNVSNNPDLGAEIPPEMWSMPFLQNFSASYGGISGNLPPFQSCKSISVVELESNHLSGIVPASISDCHDLTKIDLANNNLSGHIPEELANLPSLAVLDLSRNSFTGKIPTNLSYSSSLLLLNVSFNDLSGSIPSQNLFQSMDRSAFVGNSKLCGAPLRPCSNSIAILGTKGMGKLALILILSAGLAIFTAIAVMGMFYFRKGSKGQWKMVSFTGLPLFTANDVLRSFSSEESKNAAPPLSTSISKAVLPTGITVSVKKIEWKTKRIRAMSEFITQLGNVRHQNLVRLLGFCHNKQMAYLLFDHLPNENLADKIATNKEWLFKAKIVMGIAKGLCFLHHDCYPAIPHGDLKSSNIVFDENMEPHLTEFGLKFLMQLNGSSLPTSSRRETGIFGEIIMEILTNGRLINAGTSIQNKRREDLLRQILEENKINSMNSQEEAKLVLEVAILCTKSRPSERPSMEDLLKLLSGIERMSGWDEGAIFYSDQAQSLGDGSGGGRAGDPESAGATNHSVLRKFKEFIRSFETDKNVFPYRESLLHNPRFLCVDMEDLNAFDADLPDKLRSSPADYLPLFETAAAEVLMNLRTKVAGETGEMVEPVPGDVQILLISNEDPMSMRSLGAQYISKLVKISGITIAASRTKAKATYVILLCKNCRSMQRVSCRPGLGGAIVPRSCNHIPQAGEDPCPLDPWIVVPDRSTYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSSASHKGAVAVRQPYIRVVGMEEASEANSRSRVSCTPEEVEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSKKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDNSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRYMKLELFLDIFPHLPNYQISNLFIFFIRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASANSTKGENRASKEDNWLKRYIQYCRTECHPRLSESASAMLQNSYVKIRQDMRKQANETGETTPIPITVRQLEAIVRISEALAKMKLSHVATEENVQEAIRIFTVSTMDAARSGINDVVNLTSDMANEIKQAETQIKRRIGIGNHISERRLIDDLTRMGLNESIVRRALIVMHQRDEVEYKREKRFIFRKA 1699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2423821 2434476 + Bma000459.1 Bma01g00291 74808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00291 1699 SUPERFAMILY L domain-like 56 399 - -
Bma01g00291 1699 Gene3D - 971 1056 - -
Bma01g00291 1699 Gene3D - 1250 1632 IPR027417 -
Bma01g00291 1699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Bma01g00291 1699 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 9 934 - -
Bma01g00291 1699 SMART mcm 1074 1616 IPR031327 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 SUPERFAMILY Protein kinase-like (PK-like) 707 930 IPR011009 -
Bma01g00291 1699 Pfam MCM AAA-lid domain 1525 1614 IPR041562 -
Bma01g00291 1699 Pfam MCM N-terminal domain 977 1047 IPR027925 -
Bma01g00291 1699 Gene3D Ribonuclease Inhibitor 389 628 IPR032675 -
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1229 1241 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1609 1626 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1533 1548 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1079 1094 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 1105 1117 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Bma01g00291 1699 Gene3D Ribonuclease Inhibitor 284 386 IPR032675 -
Bma01g00291 1699 Pfam MCM OB domain 1078 1213 IPR033762 -
Bma01g00291 1699 Gene3D Phosphorylase Kinase; domain 1 700 767 - -
Bma01g00291 1699 Gene3D - 1105 1163 - -
Bma01g00291 1699 Pfam MCM P-loop domain 1421 1507 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 Pfam MCM P-loop domain 1257 1395 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 SUPERFAMILY RNI-like 345 604 - -
Bma01g00291 1699 SMART serkin_6 682 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00291 1699 SUPERFAMILY Nucleic acid-binding proteins 978 1235 IPR012340 -
Bma01g00291 1699 Pfam Protein kinase domain 713 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00291 1699 SMART LRR_typ_2 123 147 IPR003591 -
Bma01g00291 1699 SMART LRR_typ_2 555 579 IPR003591 -
Bma01g00291 1699 SMART LRR_typ_2 339 363 IPR003591 -
Bma01g00291 1699 SMART LRR_typ_2 195 219 IPR003591 -
Bma01g00291 1699 SMART LRR_typ_2 267 290 IPR003591 -
Bma01g00291 1699 ProSiteProfiles Protein kinase domain profile. 652 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g00291 1699 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Bma01g00291 1699 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Bma01g00291 1699 ProSiteProfiles MCM family domain profile. 1269 1503 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 Pfam Leucine rich repeat 511 567 IPR001611 GO:0005515
Bma01g00291 1699 Pfam Leucine rich repeat 293 350 IPR001611 GO:0005515
Bma01g00291 1699 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Bma01g00291 1699 ProSitePatterns MCM family signature. 1378 1386 IPR018525 GO:0003677|GO:0005524|GO:0006260
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1310 1325 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1450 1462 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1426 1439 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 PRINTS Mini-chromosome maintenance (MCM) protein family signature 1477 1485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Bma01g00291 1699 Gene3D - 1078 1213 IPR012340 -
Bma01g00291 1699 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515
Bma01g00291 1699 PANTHER UNNAMED PRODUCT 9 934 - -
Bma01g00291 1699 CDD MCM5 1273 1614 - -
Bma01g00291 1699 Gene3D Transferase(Phosphotransferase) domain 1 768 854 - -
Bma01g00291 1699 Gene3D Transferase(Phosphotransferase) domain 1 855 941 - -
Bma01g00291 1699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1279 1615 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00291 Bma-Chr1:2423821 Bma14g01968 Bma-Chr14:42581795 0 dispersed
Bma07g01373 Bma-Chr7:49350150 Bma01g00291 Bma-Chr1:2423821 3.48E-94 dispersed
Bma08g00812 Bma-Chr8:45744474 Bma01g00291 Bma-Chr1:2423821 8.33E-09 dispersed
Bma15g00493 Bma-Chr15:5716328 Bma01g00291 Bma-Chr1:2423821 6.46E-89 dispersed
Bma01g00291 Bma-Chr1:2423821 Bma09g00155 Bma-Chr9:5397708 7.52E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66248 PF00493 MCM 1.40E-57 CL0023 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00291 - - qsu:112035645 1294.64