Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g00293 ATGACTATGGAGGACCGAGTGGATGCAGTTTCCGGTGAGGCTGACAAGTTTCCGGTCGGTCTGCGTGTCCTTGTGGTGGACGACGATCTTTGTTGCCTCAAATTGGTGGAGACTATTCTTAAAAAGTGCCGGTTTAATGTAACGACCACCAGTCAGCCAATGGAAGCATTGAAGATGTTAAGAGAAGATAAAAACCGGTTTGAAATTGTAATTACTGATGTGAATATGCCTGGAATGGATGGTTTTAAGCTTCTCGAGCTGATTGGGCTTGAAATGGACCTCCCCGTTATAATGTTGTCGGCTCATAGCGACACGAAATACGTTATGAAAGGAGTTCAACACGGGGCCTGCGATTATCTGGTGAAGCCGTGTCGAATGTTGGAGTTGCAGAACATTTGGCTGCATGTTTTCAAGAGAAAGCATATGAGCCAGAAGGACAAGAACAATAACAGCCCAAATCAAGATGATGAACAAGGATTGGCACAGCCTGAAAATCCCAAAAATTCCGATAATTCGAAAGCGGGTCAAAAGAGGAAGGACCGGAACCAAGGGGAGGAAGACGAGAATGGCGAAAGTGAGACCGAAGATCCGGCTACAACTCAGAAGAAGCCAAGAGTGGTTTGGTCACTCGAGCTGCACCAGAAGTTTGTAGCAGCTATTACTCATTTGACTATTGAAAAGGCCGTCCCTAAGAAGATTCTCGATTGGATGAACATCGAAGGACTCACTCGAGAAAACGTGGCCAGCCATCTTCAGAAATATAGGCTCTACCTGAAAAGAATTGAGGCTGCAAAAAATAAACAGGACAATCGGATGCACATAAGGTCAATTGACGGATTTGGGTTGCAGGAATCTCGAAGATTTCCGACCATTCCATTATCGTCGACTCCGCCGAGTGGAGTTCTTAGTAGATTCAACTCTCCTTCCGGATTGAACATGAATGGGATTGTTTCTCCAGGATTAATCCAGCAAAATACTTCTCAGAACATGAACAATTTCTTTGGTTTACGAGGAAAATTCCCGCAAAGCCAATTGCCGGAGTTATTTCAGGGAAATCCGATATCATTAGAGGTTAATCAGATCAACAATCTCTCTGGCTTCTCATATCCAACTAGTTTTCCCAACAATAGAGTTGGTTTTGCTAGCTCGATAAATCCCGGGCCGAGATTGTTGGCAAATCAATTGCTTTTGCAAGGAAATCAACATGTTCTAGGAGCCGCTCCATTGAAATCGGAATCTTTCAATAATGGCACAAACGTGGCGTCAAATCTTTTGGCTCATGATCAAAGCAAAAGAGATTGGCAGCAAGAAGTTCATTTGTCTAAATTTCAATCAACCGGATTCAGATCTTTCGAAACTCACTATCATCATGAAATGTCTTTGAACAACTCGAGAATATCTCATGCTCACTCTCCTATCGATACACGATTGATGAATGCAGATCAAAATCCTCAGCCTAATTTTCTAGTAAACGTCCCCTGCCAAGAAGATCTGATAGGCAGTGCCGTCCAAACTGTGAATTGTATACAAAAGCCGAATGGGGAAGAACACAAACCCATTTTTGGACACAATCCAAATCAGTCTGCGATGAATCCTCCAACTTTGGCCGATGAAATTGTGGGTCATAATGACATGGCATGTGTACAAAATCCCGATATATCACGATTGATCGCCCAATCCAATGACAGTATGGTATCATTTGGGCAGCTCAATGCGGCCGATAAACCGCTGGCAGACCCGAGCATGAATTTCAATGTGAACAACTTCTTGAATATGGCACAAGATGGGTTCTTTCAAAGTGACTTTGATTCATTAGATGATATGGTCAATGTGGACGACAAACATGTAATCTCTCTGATCTTCCTCCTATATATCTCTAATTATCTCAATCTAAAAATGTCCTTCCCCAAAATAAAATTTCGGTTTGATGATAAATTACAGTAA 1944 42.49 MTMEDRVDAVSGEADKFPVGLRVLVVDDDLCCLKLVETILKKCRFNVTTTSQPMEALKMLREDKNRFEIVITDVNMPGMDGFKLLELIGLEMDLPVIMLSAHSDTKYVMKGVQHGACDYLVKPCRMLELQNIWLHVFKRKHMSQKDKNNNSPNQDDEQGLAQPENPKNSDNSKAGQKRKDRNQGEEDENGESETEDPATTQKKPRVVWSLELHQKFVAAITHLTIEKAVPKKILDWMNIEGLTRENVASHLQKYRLYLKRIEAAKNKQDNRMHIRSIDGFGLQESRRFPTIPLSSTPPSGVLSRFNSPSGLNMNGIVSPGLIQQNTSQNMNNFFGLRGKFPQSQLPELFQGNPISLEVNQINNLSGFSYPTSFPNNRVGFASSINPGPRLLANQLLLQGNQHVLGAAPLKSESFNNGTNVASNLLAHDQSKRDWQQEVHLSKFQSTGFRSFETHYHHEMSLNNSRISHAHSPIDTRLMNADQNPQPNFLVNVPCQEDLIGSAVQTVNCIQKPNGEEHKPIFGHNPNQSAMNPPTLADEIVGHNDMACVQNPDISRLIAQSNDSMVSFGQLNAADKPLADPSMNFNVNNFLNMAQDGFFQSDFDSLDDMVNVDDKHVISLIFLLYISNYLNLKMSFPKIKFRFDDKLQ 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2444553 2447100 + Bma000461.1 Bma01g00293 74810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g00293 647 CDD REC_typeB_ARR-like 23 137 - -
Bma01g00293 647 Gene3D - 199 262 - -
Bma01g00293 647 MobiDBLite consensus disorder prediction 153 170 - -
Bma01g00293 647 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Bma01g00293 647 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Bma01g00293 647 SMART REC_2 21 133 IPR001789 GO:0000160
Bma01g00293 647 Gene3D - 21 158 - -
Bma01g00293 647 PIRSF RR_ARR_type-B 1 638 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bma01g00293 647 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 616 - -
Bma01g00293 647 Pfam Response regulator receiver domain 23 130 IPR001789 GO:0000160
Bma01g00293 647 SUPERFAMILY CheY-like 20 147 IPR011006 -
Bma01g00293 647 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 616 IPR045279 GO:0009736
Bma01g00293 647 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Bma01g00293 647 MobiDBLite consensus disorder prediction 143 202 - -
Bma01g00293 647 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00293 Bma-Chr1:2444553 Bma01g00296 Bma-Chr1:2471415 0 dispersed
Bma01g00293 Bma-Chr1:2444553 Bma01g00295 Bma-Chr1:2456059 0 proximal
Bma01g00293 Bma-Chr1:2444553 Bma06g00994 Bma-Chr6:46458801 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56627 PF00072 Response_reg 6.30E-25 CL0304 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g00293 K14491 - jre:109012904 474.937